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3DZ6

Human AdoMetDC with 5'-[(4-aminooxybutyl)methylamino]-5'deoxy-8-ethyladenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004014molecular_functionadenosylmethionine decarboxylase activity
A0006597biological_processspermine biosynthetic process
A0008295biological_processspermidine biosynthetic process
B0004014molecular_functionadenosylmethionine decarboxylase activity
B0008295biological_processspermidine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PYR A 68
ChainResidue
ASER69
ALYS80
ATHR81
AHIS243
BLEU65

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PUT B 350
ChainResidue
BGLU15
BHOH351
AASP174
ATHR176
AHOH386
BLEU13

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE M8E A 368
ChainResidue
ACYS82
APHE223
AASN224
APRO225
ACYS226
AGLY227
ATYR228
ASER229
AILE244
ATHR245
APRO246
AGLU247
AHOH470
AHOH472
BPHE7
BLEU65
BSER66
BGLU67

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PubMed","id":"1917972","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11583147","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Proton donor; for catalytic activity","evidences":[{"source":"PubMed","id":"10029540","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11583147","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsActive site: {"description":"Proton acceptor; for processing activity","evidences":[{"source":"PubMed","id":"11583147","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 575
ChainResidueDetails
BSER19proton shuttle (general acid/base)

246905

PDB entries from 2025-12-31

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