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3DOY

Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with compound 3i

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006633biological_processfatty acid biosynthetic process
A0009245biological_processlipid A biosynthetic process
A0016829molecular_functionlyase activity
A0016836molecular_functionhydro-lyase activity
A0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
B0005737cellular_componentcytoplasm
B0006633biological_processfatty acid biosynthetic process
B0009245biological_processlipid A biosynthetic process
B0016829molecular_functionlyase activity
B0016836molecular_functionhydro-lyase activity
B0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
C0005737cellular_componentcytoplasm
C0006633biological_processfatty acid biosynthetic process
C0009245biological_processlipid A biosynthetic process
C0016829molecular_functionlyase activity
C0016836molecular_functionhydro-lyase activity
C0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
D0005737cellular_componentcytoplasm
D0006633biological_processfatty acid biosynthetic process
D0009245biological_processlipid A biosynthetic process
D0016829molecular_functionlyase activity
D0016836molecular_functionhydro-lyase activity
D0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
E0005737cellular_componentcytoplasm
E0006633biological_processfatty acid biosynthetic process
E0009245biological_processlipid A biosynthetic process
E0016829molecular_functionlyase activity
E0016836molecular_functionhydro-lyase activity
E0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
F0005737cellular_componentcytoplasm
F0006633biological_processfatty acid biosynthetic process
F0009245biological_processlipid A biosynthetic process
F0016829molecular_functionlyase activity
F0016836molecular_functionhydro-lyase activity
F0019171molecular_function(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1001
ChainResidue
AHIS58
AGLY67
BHOH3006

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 1002
ChainResidue
AHOH3025
BHIS58
BGLY67
BHOH3026

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL C 1003
ChainResidue
CGLY67
DHOH3210

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL D 1004
ChainResidue
DGLY67

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL E 1005
ChainResidue
EGLY67
FHOH3239

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL F 1006
ChainResidue
EHOH3133
EHOH3262
FGLY67

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BEN A 2001
ChainResidue
AGLN40
AGLU124
AVAL125
ETHR138
EVAL145
EGLU148

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BEN A 2005
ChainResidue
AMET131
AMET154
FTRP87
FASP90
FILE93

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 2BE A 3001
ChainResidue
APHE59
ALYS62
APHE109
AARG110
AILE111
APRO112
BILE98
BTYR100
BARG158
BHOH3370

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BEN B 2007
ChainResidue
BTRP87
BGLY88
ELEU86
ETRP87
EGLY130
EHOH3395

site_idBC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BEN B 2009
ChainResidue
BILE20
BLEU21
BPRO22
BHIS23
BPHE83
BALA94
BLYS97
BILE98
BVAL99
BHOH3479

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BEN C 2004
ChainResidue
CALA38
CTHR84
CSER85
CLEU86
CTRP87
CGLY88
DGLN40

site_idBC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 2BE C 3002
ChainResidue
CLEU21
CPRO22
CHIS23
CGLY79
CILE98
CVAL99
CPHE101
CARG158
DPHE59
DILE64

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BEN E 2008
ChainResidue
ATHR138
AGLU148
EGLU124
EVAL125
ELEU126
EHOH3197

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
AGLU72

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
BGLU72

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
CGLU72

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
DGLU72

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
EGLU72

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mka
ChainResidueDetails
FGLU72

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PDB entries from 2024-10-30

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