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3DMF

T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoMet

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003676molecular_functionnucleic acid binding
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008170molecular_functionN-methyltransferase activity
A0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 382
ChainResidue
AARG28
AHOH920
AASN53
APRO110
AALA111
AGLY112
AARG113
AHOH443
AHOH480
AHOH835

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 383
ChainResidue
ATHR4
AARG5
AASN324
ALYS353
AHOH514

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 384
ChainResidue
ASER184
ALEU185
ATRP186
AHOH546
AHOH973

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 385
ChainResidue
ALYS177
AARG192
AGLY195
AHOH460

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 386
ChainResidue
AARG164
ALEU360
ALYS361
AHOH484
AHOH520
AHOH744

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 387
ChainResidue
AARG298
AARG331
AHOH568
AHOH634

site_idAC7
Number of Residues22
DetailsBINDING SITE FOR RESIDUE SAM A 388
ChainResidue
ATYR8
APHE207
ASER216
AGLY241
AALA242
AGLY243
AALA246
AGLU262
AASP263
ASER287
AASP288
AASN305
APRO306
AHOH405
AHOH420
AHOH426
AHOH434
AHOH435
AHOH446
AHOH451
AHOH490
AHOH815

Functional Information from PROSITE/UniProt
site_idPS00092
Number of Residues7
DetailsN6_MTASE N-6 Adenine-specific DNA methylases signature. IVTNPPF
ChainResidueDetails
AILE302-PHE308

site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLDlGAGyGaLTlplArmgae...VvGVEdD
ChainResidueDetails
AVAL237-ASP264

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1qam
ChainResidueDetails
AGLU262
AASN305
AGLY241

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PDB entries from 2024-07-17

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