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3DKU

Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1

Functional Information from GO Data
ChainGOidnamespacecontents
A0004787molecular_functionthiamine diphosphate phosphatase activity
A0016787molecular_functionhydrolase activity
A0017110molecular_functionnucleoside diphosphate phosphatase activity
A0017111molecular_functionribonucleoside triphosphate phosphatase activity
B0004787molecular_functionthiamine diphosphate phosphatase activity
B0016787molecular_functionhydrolase activity
B0017110molecular_functionnucleoside diphosphate phosphatase activity
B0017111molecular_functionribonucleoside triphosphate phosphatase activity
C0004787molecular_functionthiamine diphosphate phosphatase activity
C0016787molecular_functionhydrolase activity
C0017110molecular_functionnucleoside diphosphate phosphatase activity
C0017111molecular_functionribonucleoside triphosphate phosphatase activity
D0004787molecular_functionthiamine diphosphate phosphatase activity
D0016787molecular_functionhydrolase activity
D0017110molecular_functionnucleoside diphosphate phosphatase activity
D0017111molecular_functionribonucleoside triphosphate phosphatase activity
E0004787molecular_functionthiamine diphosphate phosphatase activity
E0016787molecular_functionhydrolase activity
E0017110molecular_functionnucleoside diphosphate phosphatase activity
E0017111molecular_functionribonucleoside triphosphate phosphatase activity
F0004787molecular_functionthiamine diphosphate phosphatase activity
F0016787molecular_functionhydrolase activity
F0017110molecular_functionnucleoside diphosphate phosphatase activity
F0017111molecular_functionribonucleoside triphosphate phosphatase activity
G0004787molecular_functionthiamine diphosphate phosphatase activity
G0016787molecular_functionhydrolase activity
G0017110molecular_functionnucleoside diphosphate phosphatase activity
G0017111molecular_functionribonucleoside triphosphate phosphatase activity
H0004787molecular_functionthiamine diphosphate phosphatase activity
H0016787molecular_functionhydrolase activity
H0017110molecular_functionnucleoside diphosphate phosphatase activity
H0017111molecular_functionribonucleoside triphosphate phosphatase activity
Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GhleadEtlveAAaRELwEEtG
ChainResidueDetails
AGLY36-GLY57

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1024
DetailsDomain: {"description":"Nudix hydrolase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00794","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues168
DetailsMotif: {"description":"Nudix box"}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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