3DFY
Crystal structure of apo dipeptide epimerase from Thermotoga maritima
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006518 | biological_process | peptide metabolic process |
| A | 0016854 | molecular_function | racemase and epimerase activity |
| A | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| A | 0016998 | biological_process | cell wall macromolecule catabolic process |
| A | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| B | 0006518 | biological_process | peptide metabolic process |
| B | 0016854 | molecular_function | racemase and epimerase activity |
| B | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| B | 0016998 | biological_process | cell wall macromolecule catabolic process |
| B | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| C | 0006518 | biological_process | peptide metabolic process |
| C | 0016854 | molecular_function | racemase and epimerase activity |
| C | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| C | 0016998 | biological_process | cell wall macromolecule catabolic process |
| C | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| D | 0006518 | biological_process | peptide metabolic process |
| D | 0016854 | molecular_function | racemase and epimerase activity |
| D | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| D | 0016998 | biological_process | cell wall macromolecule catabolic process |
| D | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| E | 0006518 | biological_process | peptide metabolic process |
| E | 0016854 | molecular_function | racemase and epimerase activity |
| E | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| E | 0016998 | biological_process | cell wall macromolecule catabolic process |
| E | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| F | 0006518 | biological_process | peptide metabolic process |
| F | 0016854 | molecular_function | racemase and epimerase activity |
| F | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| F | 0016998 | biological_process | cell wall macromolecule catabolic process |
| F | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| G | 0006518 | biological_process | peptide metabolic process |
| G | 0016854 | molecular_function | racemase and epimerase activity |
| G | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| G | 0016998 | biological_process | cell wall macromolecule catabolic process |
| G | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| H | 0006518 | biological_process | peptide metabolic process |
| H | 0016854 | molecular_function | racemase and epimerase activity |
| H | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| H | 0016998 | biological_process | cell wall macromolecule catabolic process |
| H | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| I | 0006518 | biological_process | peptide metabolic process |
| I | 0016854 | molecular_function | racemase and epimerase activity |
| I | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| I | 0016998 | biological_process | cell wall macromolecule catabolic process |
| I | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| J | 0006518 | biological_process | peptide metabolic process |
| J | 0016854 | molecular_function | racemase and epimerase activity |
| J | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| J | 0016998 | biological_process | cell wall macromolecule catabolic process |
| J | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| K | 0006518 | biological_process | peptide metabolic process |
| K | 0016854 | molecular_function | racemase and epimerase activity |
| K | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| K | 0016998 | biological_process | cell wall macromolecule catabolic process |
| K | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| L | 0006518 | biological_process | peptide metabolic process |
| L | 0016854 | molecular_function | racemase and epimerase activity |
| L | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| L | 0016998 | biological_process | cell wall macromolecule catabolic process |
| L | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| M | 0006518 | biological_process | peptide metabolic process |
| M | 0016854 | molecular_function | racemase and epimerase activity |
| M | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| M | 0016998 | biological_process | cell wall macromolecule catabolic process |
| M | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| N | 0006518 | biological_process | peptide metabolic process |
| N | 0016854 | molecular_function | racemase and epimerase activity |
| N | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| N | 0016998 | biological_process | cell wall macromolecule catabolic process |
| N | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| O | 0006518 | biological_process | peptide metabolic process |
| O | 0016854 | molecular_function | racemase and epimerase activity |
| O | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| O | 0016998 | biological_process | cell wall macromolecule catabolic process |
| O | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
| P | 0006518 | biological_process | peptide metabolic process |
| P | 0016854 | molecular_function | racemase and epimerase activity |
| P | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| P | 0016998 | biological_process | cell wall macromolecule catabolic process |
| P | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG A 401 |
| Chain | Residue |
| A | ASP188 |
| A | GLU216 |
| A | ASP241 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG B 401 |
| Chain | Residue |
| B | ASP188 |
| B | GLU216 |
| B | ASP241 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG C 401 |
| Chain | Residue |
| C | ASP188 |
| C | GLU216 |
| C | ASP241 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG D 401 |
| Chain | Residue |
| D | ASP188 |
| D | GLU216 |
| D | ASP241 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG E 401 |
| Chain | Residue |
| E | ASP188 |
| E | GLU216 |
| E | ASP241 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG F 401 |
| Chain | Residue |
| F | ASP188 |
| F | GLU216 |
| F | ASP241 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG G 401 |
| Chain | Residue |
| G | ASP188 |
| G | GLU216 |
| G | ASP241 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG H 401 |
| Chain | Residue |
| H | ASP188 |
| H | GLU216 |
| H | ASP241 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG I 401 |
| Chain | Residue |
| I | ASP188 |
| I | GLU216 |
| I | ASP241 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG J 401 |
| Chain | Residue |
| J | ASP188 |
| J | GLU216 |
| J | ASP241 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG K 401 |
| Chain | Residue |
| K | ASP188 |
| K | GLU216 |
| K | ASP241 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG L 401 |
| Chain | Residue |
| L | ASP188 |
| L | GLU216 |
| L | ASP241 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG M 401 |
| Chain | Residue |
| M | ASP188 |
| M | GLU216 |
| M | ASP241 |
| M | GLU242 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG N 401 |
| Chain | Residue |
| N | ASP188 |
| N | ASN190 |
| N | GLU216 |
| N | ASP241 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG O 401 |
| Chain | Residue |
| O | ASP188 |
| O | GLU216 |
| O | ASP241 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG P 401 |
| Chain | Residue |
| P | ASP188 |
| P | GLU216 |
| P | ASP241 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | Active site: {"description":"Proton acceptor; specific for (R)-substrate epimerization","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | Active site: {"description":"Proton acceptor; specific for (S)-substrate epimerization","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 144 |
| Details | Binding site: {} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| A | ASP317 | |
| A | LYS161 | |
| A | LYS159 |
| site_id | CSA10 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| J | ASP317 | |
| J | LYS161 | |
| J | LYS159 |
| site_id | CSA11 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| K | ASP317 | |
| K | LYS161 | |
| K | LYS159 |
| site_id | CSA12 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| L | ASP317 | |
| L | LYS161 | |
| L | LYS159 |
| site_id | CSA13 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| M | ASP317 | |
| M | LYS161 | |
| M | LYS159 |
| site_id | CSA14 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| N | ASP317 | |
| N | LYS161 | |
| N | LYS159 |
| site_id | CSA15 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| O | ASP317 | |
| O | LYS161 | |
| O | LYS159 |
| site_id | CSA16 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| P | ASP317 | |
| P | LYS161 | |
| P | LYS159 |
| site_id | CSA17 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| A | LYS161 | |
| A | LYS265 |
| site_id | CSA18 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| B | LYS161 | |
| B | LYS265 |
| site_id | CSA19 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| C | LYS161 | |
| C | LYS265 |
| site_id | CSA2 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| B | ASP317 | |
| B | LYS161 | |
| B | LYS159 |
| site_id | CSA20 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| D | LYS161 | |
| D | LYS265 |
| site_id | CSA21 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| E | LYS161 | |
| E | LYS265 |
| site_id | CSA22 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| F | LYS161 | |
| F | LYS265 |
| site_id | CSA23 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| G | LYS161 | |
| G | LYS265 |
| site_id | CSA24 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| H | LYS161 | |
| H | LYS265 |
| site_id | CSA25 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| I | LYS161 | |
| I | LYS265 |
| site_id | CSA26 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| J | LYS161 | |
| J | LYS265 |
| site_id | CSA27 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| K | LYS161 | |
| K | LYS265 |
| site_id | CSA28 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| L | LYS161 | |
| L | LYS265 |
| site_id | CSA29 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| M | LYS161 | |
| M | LYS265 |
| site_id | CSA3 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| C | ASP317 | |
| C | LYS161 | |
| C | LYS159 |
| site_id | CSA30 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| N | LYS161 | |
| N | LYS265 |
| site_id | CSA31 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| O | LYS161 | |
| O | LYS265 |
| site_id | CSA32 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| P | LYS161 | |
| P | LYS265 |
| site_id | CSA4 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| D | ASP317 | |
| D | LYS161 | |
| D | LYS159 |
| site_id | CSA5 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| E | ASP317 | |
| E | LYS161 | |
| E | LYS159 |
| site_id | CSA6 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| F | ASP317 | |
| F | LYS161 | |
| F | LYS159 |
| site_id | CSA7 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| G | ASP317 | |
| G | LYS161 | |
| G | LYS159 |
| site_id | CSA8 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| H | ASP317 | |
| H | LYS161 | |
| H | LYS159 |
| site_id | CSA9 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1muc |
| Chain | Residue | Details |
| I | ASP317 | |
| I | LYS161 | |
| I | LYS159 |
