3DFY
Crystal structure of apo dipeptide epimerase from Thermotoga maritima
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016853 | molecular_function | isomerase activity |
A | 0016854 | molecular_function | racemase and epimerase activity |
A | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
A | 0016998 | biological_process | cell wall macromolecule catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0071555 | biological_process | cell wall organization |
A | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
B | 0016853 | molecular_function | isomerase activity |
B | 0016854 | molecular_function | racemase and epimerase activity |
B | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
B | 0016998 | biological_process | cell wall macromolecule catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0071555 | biological_process | cell wall organization |
B | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
C | 0016853 | molecular_function | isomerase activity |
C | 0016854 | molecular_function | racemase and epimerase activity |
C | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
C | 0016998 | biological_process | cell wall macromolecule catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0071555 | biological_process | cell wall organization |
C | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
D | 0016853 | molecular_function | isomerase activity |
D | 0016854 | molecular_function | racemase and epimerase activity |
D | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
D | 0016998 | biological_process | cell wall macromolecule catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0071555 | biological_process | cell wall organization |
D | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
E | 0016853 | molecular_function | isomerase activity |
E | 0016854 | molecular_function | racemase and epimerase activity |
E | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
E | 0016998 | biological_process | cell wall macromolecule catabolic process |
E | 0046872 | molecular_function | metal ion binding |
E | 0071555 | biological_process | cell wall organization |
E | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
F | 0016853 | molecular_function | isomerase activity |
F | 0016854 | molecular_function | racemase and epimerase activity |
F | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
F | 0016998 | biological_process | cell wall macromolecule catabolic process |
F | 0046872 | molecular_function | metal ion binding |
F | 0071555 | biological_process | cell wall organization |
F | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
G | 0016853 | molecular_function | isomerase activity |
G | 0016854 | molecular_function | racemase and epimerase activity |
G | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
G | 0016998 | biological_process | cell wall macromolecule catabolic process |
G | 0046872 | molecular_function | metal ion binding |
G | 0071555 | biological_process | cell wall organization |
G | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
H | 0016853 | molecular_function | isomerase activity |
H | 0016854 | molecular_function | racemase and epimerase activity |
H | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
H | 0016998 | biological_process | cell wall macromolecule catabolic process |
H | 0046872 | molecular_function | metal ion binding |
H | 0071555 | biological_process | cell wall organization |
H | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
I | 0016853 | molecular_function | isomerase activity |
I | 0016854 | molecular_function | racemase and epimerase activity |
I | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
I | 0016998 | biological_process | cell wall macromolecule catabolic process |
I | 0046872 | molecular_function | metal ion binding |
I | 0071555 | biological_process | cell wall organization |
I | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
J | 0016853 | molecular_function | isomerase activity |
J | 0016854 | molecular_function | racemase and epimerase activity |
J | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
J | 0016998 | biological_process | cell wall macromolecule catabolic process |
J | 0046872 | molecular_function | metal ion binding |
J | 0071555 | biological_process | cell wall organization |
J | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
K | 0016853 | molecular_function | isomerase activity |
K | 0016854 | molecular_function | racemase and epimerase activity |
K | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
K | 0016998 | biological_process | cell wall macromolecule catabolic process |
K | 0046872 | molecular_function | metal ion binding |
K | 0071555 | biological_process | cell wall organization |
K | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
L | 0016853 | molecular_function | isomerase activity |
L | 0016854 | molecular_function | racemase and epimerase activity |
L | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
L | 0016998 | biological_process | cell wall macromolecule catabolic process |
L | 0046872 | molecular_function | metal ion binding |
L | 0071555 | biological_process | cell wall organization |
L | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
M | 0016853 | molecular_function | isomerase activity |
M | 0016854 | molecular_function | racemase and epimerase activity |
M | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
M | 0016998 | biological_process | cell wall macromolecule catabolic process |
M | 0046872 | molecular_function | metal ion binding |
M | 0071555 | biological_process | cell wall organization |
M | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
N | 0016853 | molecular_function | isomerase activity |
N | 0016854 | molecular_function | racemase and epimerase activity |
N | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
N | 0016998 | biological_process | cell wall macromolecule catabolic process |
N | 0046872 | molecular_function | metal ion binding |
N | 0071555 | biological_process | cell wall organization |
N | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
O | 0016853 | molecular_function | isomerase activity |
O | 0016854 | molecular_function | racemase and epimerase activity |
O | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
O | 0016998 | biological_process | cell wall macromolecule catabolic process |
O | 0046872 | molecular_function | metal ion binding |
O | 0071555 | biological_process | cell wall organization |
O | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
P | 0016853 | molecular_function | isomerase activity |
P | 0016854 | molecular_function | racemase and epimerase activity |
P | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
P | 0016998 | biological_process | cell wall macromolecule catabolic process |
P | 0046872 | molecular_function | metal ion binding |
P | 0071555 | biological_process | cell wall organization |
P | 0103031 | molecular_function | L-Ala-D/L-Glu epimerase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG A 401 |
Chain | Residue |
A | ASP188 |
A | GLU216 |
A | ASP241 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG B 401 |
Chain | Residue |
B | ASP188 |
B | GLU216 |
B | ASP241 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG C 401 |
Chain | Residue |
C | ASP188 |
C | GLU216 |
C | ASP241 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG D 401 |
Chain | Residue |
D | ASP188 |
D | GLU216 |
D | ASP241 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG E 401 |
Chain | Residue |
E | ASP188 |
E | GLU216 |
E | ASP241 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG F 401 |
Chain | Residue |
F | ASP188 |
F | GLU216 |
F | ASP241 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG G 401 |
Chain | Residue |
G | ASP188 |
G | GLU216 |
G | ASP241 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG H 401 |
Chain | Residue |
H | ASP188 |
H | GLU216 |
H | ASP241 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG I 401 |
Chain | Residue |
I | ASP188 |
I | GLU216 |
I | ASP241 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG J 401 |
Chain | Residue |
J | ASP188 |
J | GLU216 |
J | ASP241 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG K 401 |
Chain | Residue |
K | ASP188 |
K | GLU216 |
K | ASP241 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG L 401 |
Chain | Residue |
L | ASP188 |
L | GLU216 |
L | ASP241 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG M 401 |
Chain | Residue |
M | ASP188 |
M | GLU216 |
M | ASP241 |
M | GLU242 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG N 401 |
Chain | Residue |
N | ASP188 |
N | ASN190 |
N | GLU216 |
N | ASP241 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG O 401 |
Chain | Residue |
O | ASP188 |
O | GLU216 |
O | ASP241 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG P 401 |
Chain | Residue |
P | ASP188 |
P | GLU216 |
P | ASP241 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | ACT_SITE: Proton acceptor; specific for (R)-substrate epimerization => ECO:0000250 |
Chain | Residue | Details |
A | LYS161 | |
J | LYS161 | |
K | LYS161 | |
L | LYS161 | |
M | LYS161 | |
N | LYS161 | |
O | LYS161 | |
P | LYS161 | |
B | LYS161 | |
C | LYS161 | |
D | LYS161 | |
E | LYS161 | |
F | LYS161 | |
G | LYS161 | |
H | LYS161 | |
I | LYS161 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | ACT_SITE: Proton acceptor; specific for (S)-substrate epimerization => ECO:0000250 |
Chain | Residue | Details |
A | LYS265 | |
J | LYS265 | |
K | LYS265 | |
L | LYS265 | |
M | LYS265 | |
N | LYS265 | |
O | LYS265 | |
P | LYS265 | |
B | LYS265 | |
C | LYS265 | |
D | LYS265 | |
E | LYS265 | |
F | LYS265 | |
G | LYS265 | |
H | LYS265 | |
I | LYS265 |
site_id | SWS_FT_FI3 |
Number of Residues | 144 |
Details | BINDING: |
Chain | Residue | Details |
A | THR134 | |
B | THR134 | |
L | THR134 | |
L | LYS159 | |
L | ASP188 | |
L | ASN190 | |
L | GLU216 | |
L | ASP241 | |
L | CYS292 | |
L | ASP317 | |
L | ASP319 | |
M | THR134 | |
B | LYS159 | |
M | LYS159 | |
M | ASP188 | |
M | ASN190 | |
M | GLU216 | |
M | ASP241 | |
M | CYS292 | |
M | ASP317 | |
M | ASP319 | |
N | THR134 | |
N | LYS159 | |
B | ASP188 | |
N | ASP188 | |
N | ASN190 | |
N | GLU216 | |
N | ASP241 | |
N | CYS292 | |
N | ASP317 | |
N | ASP319 | |
O | THR134 | |
O | LYS159 | |
O | ASP188 | |
B | ASN190 | |
O | ASN190 | |
O | GLU216 | |
O | ASP241 | |
O | CYS292 | |
O | ASP317 | |
O | ASP319 | |
P | THR134 | |
P | LYS159 | |
P | ASP188 | |
P | ASN190 | |
B | GLU216 | |
P | GLU216 | |
P | ASP241 | |
P | CYS292 | |
P | ASP317 | |
P | ASP319 | |
B | ASP241 | |
B | CYS292 | |
B | ASP317 | |
B | ASP319 | |
C | THR134 | |
A | LYS159 | |
C | LYS159 | |
C | ASP188 | |
C | ASN190 | |
C | GLU216 | |
C | ASP241 | |
C | CYS292 | |
C | ASP317 | |
C | ASP319 | |
D | THR134 | |
D | LYS159 | |
A | ASP188 | |
D | ASP188 | |
D | ASN190 | |
D | GLU216 | |
D | ASP241 | |
D | CYS292 | |
D | ASP317 | |
D | ASP319 | |
E | THR134 | |
E | LYS159 | |
E | ASP188 | |
A | ASN190 | |
E | ASN190 | |
E | GLU216 | |
E | ASP241 | |
E | CYS292 | |
E | ASP317 | |
E | ASP319 | |
F | THR134 | |
F | LYS159 | |
F | ASP188 | |
F | ASN190 | |
A | GLU216 | |
F | GLU216 | |
F | ASP241 | |
F | CYS292 | |
F | ASP317 | |
F | ASP319 | |
G | THR134 | |
G | LYS159 | |
G | ASP188 | |
G | ASN190 | |
G | GLU216 | |
A | ASP241 | |
G | ASP241 | |
G | CYS292 | |
G | ASP317 | |
G | ASP319 | |
H | THR134 | |
H | LYS159 | |
H | ASP188 | |
H | ASN190 | |
H | GLU216 | |
H | ASP241 | |
A | CYS292 | |
H | CYS292 | |
H | ASP317 | |
H | ASP319 | |
I | THR134 | |
I | LYS159 | |
I | ASP188 | |
I | ASN190 | |
I | GLU216 | |
I | ASP241 | |
I | CYS292 | |
A | ASP317 | |
I | ASP317 | |
I | ASP319 | |
J | THR134 | |
J | LYS159 | |
J | ASP188 | |
J | ASN190 | |
J | GLU216 | |
J | ASP241 | |
J | CYS292 | |
J | ASP317 | |
A | ASP319 | |
J | ASP319 | |
K | THR134 | |
K | LYS159 | |
K | ASP188 | |
K | ASN190 | |
K | GLU216 | |
K | ASP241 | |
K | CYS292 | |
K | ASP317 | |
K | ASP319 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
A | ASP317 | |
A | LYS161 | |
A | LYS159 |
site_id | CSA10 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
J | ASP317 | |
J | LYS161 | |
J | LYS159 |
site_id | CSA11 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
K | ASP317 | |
K | LYS161 | |
K | LYS159 |
site_id | CSA12 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
L | ASP317 | |
L | LYS161 | |
L | LYS159 |
site_id | CSA13 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
M | ASP317 | |
M | LYS161 | |
M | LYS159 |
site_id | CSA14 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
N | ASP317 | |
N | LYS161 | |
N | LYS159 |
site_id | CSA15 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
O | ASP317 | |
O | LYS161 | |
O | LYS159 |
site_id | CSA16 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
P | ASP317 | |
P | LYS161 | |
P | LYS159 |
site_id | CSA17 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
A | LYS161 | |
A | LYS265 |
site_id | CSA18 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
B | LYS161 | |
B | LYS265 |
site_id | CSA19 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
C | LYS161 | |
C | LYS265 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
B | ASP317 | |
B | LYS161 | |
B | LYS159 |
site_id | CSA20 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
D | LYS161 | |
D | LYS265 |
site_id | CSA21 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
E | LYS161 | |
E | LYS265 |
site_id | CSA22 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
F | LYS161 | |
F | LYS265 |
site_id | CSA23 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
G | LYS161 | |
G | LYS265 |
site_id | CSA24 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
H | LYS161 | |
H | LYS265 |
site_id | CSA25 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
I | LYS161 | |
I | LYS265 |
site_id | CSA26 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
J | LYS161 | |
J | LYS265 |
site_id | CSA27 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
K | LYS161 | |
K | LYS265 |
site_id | CSA28 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
L | LYS161 | |
L | LYS265 |
site_id | CSA29 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
M | LYS161 | |
M | LYS265 |
site_id | CSA3 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
C | ASP317 | |
C | LYS161 | |
C | LYS159 |
site_id | CSA30 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
N | LYS161 | |
N | LYS265 |
site_id | CSA31 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
O | LYS161 | |
O | LYS265 |
site_id | CSA32 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
P | LYS161 | |
P | LYS265 |
site_id | CSA4 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
D | ASP317 | |
D | LYS161 | |
D | LYS159 |
site_id | CSA5 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
E | ASP317 | |
E | LYS161 | |
E | LYS159 |
site_id | CSA6 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
F | ASP317 | |
F | LYS161 | |
F | LYS159 |
site_id | CSA7 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
G | ASP317 | |
G | LYS161 | |
G | LYS159 |
site_id | CSA8 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
H | ASP317 | |
H | LYS161 | |
H | LYS159 |
site_id | CSA9 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1muc |
Chain | Residue | Details |
I | ASP317 | |
I | LYS161 | |
I | LYS159 |