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3D9M

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data
ChainGOidnamespacecontents
A0000993molecular_functionRNA polymerase II complex binding
A0003729molecular_functionmRNA binding
A0006369biological_processtermination of RNA polymerase II transcription
A0006378biological_processmRNA polyadenylation
A0006379biological_processmRNA cleavage
B0000993molecular_functionRNA polymerase II complex binding
B0003729molecular_functionmRNA binding
B0006369biological_processtermination of RNA polymerase II transcription
B0006378biological_processmRNA polyadenylation
B0006379biological_processmRNA cleavage
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 400
ChainResidue
AILE37
ASER73
APHE77
AASP82

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 B 401
ChainResidue
BILE37
BSER73
BPHE77
BASP82

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 501
ChainResidue
AARG87
ALYS41

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 503
ChainResidue
AGLY78
AGLN79

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 504
ChainResidue
BLYS41
BARG87

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 506
ChainResidue
BARG71
ZPRO6
ZSER7

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 507
ChainResidue
AARG71
ALEU116
AASN120
BHIS140

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 508
ChainResidue
ATYR40
AARG87
AASN90

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 509
ChainResidue
BTYR40
BLYS41
BARG87
BASN90

Functional Information from PROSITE/UniProt
site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS
ChainResidueDetails
YTYR-6-SER0
YTYR1-SER7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:20388717
ChainResidueDetails
ATHR6
BTHR6

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)
ChainResidueDetails
ALYS18
BLYS18

237735

PDB entries from 2025-06-18

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