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3D9L

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data
ChainGOidnamespacecontents
A0000993molecular_functionRNA polymerase II complex binding
A0003729molecular_functionmRNA binding
A0006369biological_processtermination of RNA polymerase II transcription
A0006378biological_processmRNA polyadenylation
A0006379biological_processmRNA cleavage
B0000993molecular_functionRNA polymerase II complex binding
B0003729molecular_functionmRNA binding
B0006369biological_processtermination of RNA polymerase II transcription
B0006378biological_processmRNA polyadenylation
B0006379biological_processmRNA cleavage
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 501
ChainResidue
APRO20
AILE21
APRO61
ATYR64
AHOH502
YTYR1

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 503
ChainResidue
BARG87
BASN90
BTYR40
BVAL83
BPRO86

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR CHAIN Y OF CTD-PEPTIDE
ChainResidue
APRO20
AILE21
ALYS23
AMET26
ALYS31
ATYR64
AASP67
ASER68
AARG71
AGLN72
AHIS75
AGLN76
AGLN97
ATYR100
AARG101
AARG112
ALEU138
AACT501
AHOH517
BSER9
BGLU10
BSER13
YHOH65
YHOH109

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR CHAIN Z OF CTD-PEPTIDE
ChainResidue
BPRO20
BILE21
BSER22
BLYS23
BMET26
BTYR64
BASP67
BSER68
BARG71
BARG112
BHOH527

Functional Information from PROSITE/UniProt
site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS
ChainResidueDetails
YTYR1-SER7
YTYR8-SER14

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:20388717
ChainResidueDetails
ATHR6
BTHR6

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)
ChainResidueDetails
ALYS18
BLYS18

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PDB entries from 2024-07-17

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