3D5E
Crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by paraoxon
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003847 | molecular_function | 1-alkyl-2-acetylglycerophosphocholine esterase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005543 | molecular_function | phospholipid binding |
A | 0005576 | cellular_component | extracellular region |
A | 0009395 | biological_process | phospholipid catabolic process |
A | 0016486 | biological_process | peptide hormone processing |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
A | 0034362 | cellular_component | low-density lipoprotein particle |
A | 0034364 | cellular_component | high-density lipoprotein particle |
A | 0034374 | biological_process | low-density lipoprotein particle remodeling |
A | 0034440 | biological_process | lipid oxidation |
A | 0034441 | biological_process | plasma lipoprotein particle oxidation |
A | 0034638 | biological_process | phosphatidylcholine catabolic process |
A | 0046469 | biological_process | platelet activating factor metabolic process |
A | 0047499 | molecular_function | calcium-independent phospholipase A2 activity |
A | 0050729 | biological_process | positive regulation of inflammatory response |
A | 0062234 | biological_process | platelet activating factor catabolic process |
A | 0090026 | biological_process | positive regulation of monocyte chemotaxis |
B | 0003847 | molecular_function | 1-alkyl-2-acetylglycerophosphocholine esterase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005543 | molecular_function | phospholipid binding |
B | 0005576 | cellular_component | extracellular region |
B | 0009395 | biological_process | phospholipid catabolic process |
B | 0016486 | biological_process | peptide hormone processing |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
B | 0034362 | cellular_component | low-density lipoprotein particle |
B | 0034364 | cellular_component | high-density lipoprotein particle |
B | 0034374 | biological_process | low-density lipoprotein particle remodeling |
B | 0034440 | biological_process | lipid oxidation |
B | 0034441 | biological_process | plasma lipoprotein particle oxidation |
B | 0034638 | biological_process | phosphatidylcholine catabolic process |
B | 0046469 | biological_process | platelet activating factor metabolic process |
B | 0047499 | molecular_function | calcium-independent phospholipase A2 activity |
B | 0050729 | biological_process | positive regulation of inflammatory response |
B | 0062234 | biological_process | platelet activating factor catabolic process |
B | 0090026 | biological_process | positive regulation of monocyte chemotaxis |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE DEP A 473 |
Chain | Residue |
A | GLY152 |
A | LEU153 |
A | SER273 |
A | PHE274 |
A | TRP298 |
A | PHE322 |
A | HIS351 |
site_id | AC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE FMT A 2 |
Chain | Residue |
A | ASN135 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT A 3 |
Chain | Residue |
A | LYS252 |
A | ASP254 |
A | GLN257 |
A | ASN135 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT A 4 |
Chain | Residue |
A | GLU256 |
A | GLN257 |
A | LYS259 |
A | HOH509 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT A 5 |
Chain | Residue |
A | PHE300 |
A | ALA326 |
A | LYS330 |
A | HOH528 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE FMT A 11 |
Chain | Residue |
A | THR54 |
A | MET128 |
A | THR129 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE FMT A 12 |
Chain | Residue |
A | VAL379 |
A | ASP382 |
A | LYS386 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE FMT A 16 |
Chain | Residue |
A | ARG182 |
A | THR208 |
site_id | AC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE DEP B 473 |
Chain | Residue |
B | GLY152 |
B | LEU153 |
B | SER273 |
B | PHE274 |
B | TRP298 |
B | HIS351 |
B | GLN352 |
site_id | BC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE FMT B 1 |
Chain | Residue |
B | TRP298 |
B | TYR324 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT B 6 |
Chain | Residue |
B | TYR335 |
B | LYS342 |
B | MET343 |
B | HOH518 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT B 7 |
Chain | Residue |
B | ARG182 |
B | TRP203 |
B | LEU204 |
B | TYR205 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE FMT B 8 |
Chain | Residue |
B | SER230 |
B | GLN231 |
B | SER234 |
B | ARG288 |
B | HOH554 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE FMT B 9 |
Chain | Residue |
A | ILE422 |
A | ASN423 |
B | GLU320 |
B | GLN323 |
B | ASN421 |
B | ILE422 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT B 10 |
Chain | Residue |
B | PRO57 |
B | ARG58 |
B | ALA162 |
B | ASP166 |
site_id | BC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE FMT B 13 |
Chain | Residue |
A | PRO311 |
B | LYS143 |
B | ILE262 |
B | ARG264 |
B | HOH605 |
B | HOH606 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE FMT B 14 |
Chain | Residue |
B | SER234 |
B | ARG288 |
B | HOH590 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE FMT B 15 |
Chain | Residue |
B | GLN393 |
B | LYS394 |
B | ASP403 |
B | HOH498 |
Functional Information from PROSITE/UniProt
site_id | PS00120 |
Number of Residues | 10 |
Details | LIPASE_SER Lipases, serine active site. IAVIGHSFGG |
Chain | Residue | Details |
A | ILE267-GLY276 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:18784071 |
Chain | Residue | Details |
A | SER273 | |
B | SER273 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU10037, ECO:0000269|PubMed:18784071 |
Chain | Residue | Details |
A | ASP296 | |
A | HIS351 | |
B | ASP296 | |
B | HIS351 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255 |
Chain | Residue | Details |
A | ASN423 | |
B | ASN423 |