3D53
2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006796 | biological_process | phosphate-containing compound metabolic process |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006796 | biological_process | phosphate-containing compound metabolic process |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006796 | biological_process | phosphate-containing compound metabolic process |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0006796 | biological_process | phosphate-containing compound metabolic process |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0005829 | cellular_component | cytosol |
| E | 0006796 | biological_process | phosphate-containing compound metabolic process |
| E | 0016787 | molecular_function | hydrolase activity |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0004427 | molecular_function | inorganic diphosphate phosphatase activity |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0005829 | cellular_component | cytosol |
| F | 0006796 | biological_process | phosphate-containing compound metabolic process |
| F | 0016787 | molecular_function | hydrolase activity |
| F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 173 |
| Chain | Residue |
| A | MET49 |
| A | HIS136 |
| B | THR48 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL D 173 |
| Chain | Residue |
| D | THR48 |
| E | MET49 |
| E | HIS136 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL F 173 |
| Chain | Residue |
| C | MET49 |
| C | HIS136 |
| F | THR48 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 173 |
| Chain | Residue |
| A | THR48 |
| B | MET49 |
| B | HIS136 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL C 173 |
| Chain | Residue |
| C | THR48 |
| F | HIS136 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL E 173 |
| Chain | Residue |
| D | HIS136 |
| E | THR48 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 174 |
| Chain | Residue |
| A | ARG43 |
| A | GLN46 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 174 |
| Chain | Residue |
| B | ARG88 |
| B | THR110 |
| B | SER111 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL E 174 |
| Chain | Residue |
| E | ARG43 |
| E | GLN46 |
| site_id | BC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 175 |
| Chain | Residue |
| A | LYS9 |
| site_id | BC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL F 174 |
| Chain | Residue |
| F | ARG43 |
| F | GLN46 |
| site_id | BC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 175 |
| Chain | Residue |
| B | LYS9 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL E 175 |
| Chain | Residue |
| E | ARG88 |
| E | THR110 |
| E | SER111 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 176 |
| Chain | Residue |
| A | ARG88 |
| A | THR110 |
| A | SER111 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 174 |
| Chain | Residue |
| C | ARG88 |
| C | SER111 |
| C | LYS112 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 175 |
| Chain | Residue |
| C | ARG43 |
| C | MET45 |
| C | GLN46 |
| site_id | BC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL D 174 |
| Chain | Residue |
| D | ARG43 |
| D | GLN46 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL F 175 |
| Chain | Residue |
| F | ARG88 |
| F | THR110 |
| F | SER111 |
| site_id | CC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL D 175 |
| Chain | Residue |
| D | ARG88 |
| D | SER111 |
| site_id | CC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 176 |
| Chain | Residue |
| B | ARG43 |
| B | GLN46 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL E 176 |
| Chain | Residue |
| D | LEU144 |
| E | LYS132 |
| E | HIS136 |
| E | GLU139 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 177 |
| Chain | Residue |
| B | LEU123 |
| B | ASP124 |
| B | GLU128 |
| B | LYS131 |
| B | TRP155 |
| site_id | CC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 176 |
| Chain | Residue |
| B | GLU162 |
| B | THR163 |
| C | ASP65 |
Functional Information from PROSITE/UniProt
| site_id | PS00387 |
| Number of Residues | 7 |
| Details | PPASE Inorganic pyrophosphatase signature. DGDPVDV |
| Chain | Residue | Details |
| A | ASP65-VAL71 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 42 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00209 |
| Chain | Residue | Details |
| A | LYS29 | |
| B | TYR55 | |
| B | ASP65 | |
| B | ASP70 | |
| B | ASP102 | |
| B | TYR141 | |
| C | LYS29 | |
| C | ARG43 | |
| C | TYR55 | |
| C | ASP65 | |
| C | ASP70 | |
| A | ARG43 | |
| C | ASP102 | |
| C | TYR141 | |
| D | LYS29 | |
| D | ARG43 | |
| D | TYR55 | |
| D | ASP65 | |
| D | ASP70 | |
| D | ASP102 | |
| D | TYR141 | |
| E | LYS29 | |
| A | TYR55 | |
| E | ARG43 | |
| E | TYR55 | |
| E | ASP65 | |
| E | ASP70 | |
| E | ASP102 | |
| E | TYR141 | |
| F | LYS29 | |
| F | ARG43 | |
| F | TYR55 | |
| F | ASP65 | |
| A | ASP65 | |
| F | ASP70 | |
| F | ASP102 | |
| F | TYR141 | |
| A | ASP70 | |
| A | ASP102 | |
| A | TYR141 | |
| B | LYS29 | |
| B | ARG43 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| A | ASP67 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| B | ASP67 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| C | ASP67 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| D | ASP67 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| E | ASP67 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1wgi |
| Chain | Residue | Details |
| F | ASP67 |
