3D3I
Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63
Replaces: 2DS3Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004555 | molecular_function | alpha,alpha-trehalase activity |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0005991 | biological_process | trehalose metabolic process |
A | 0005993 | biological_process | trehalose catabolic process |
A | 0006974 | biological_process | DNA damage response |
A | 0009313 | biological_process | oligosaccharide catabolic process |
A | 0015926 | molecular_function | glucosidase activity |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0046872 | molecular_function | metal ion binding |
A | 1902687 | cellular_component | glucosidase complex |
B | 0004555 | molecular_function | alpha,alpha-trehalase activity |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0005991 | biological_process | trehalose metabolic process |
B | 0005993 | biological_process | trehalose catabolic process |
B | 0006974 | biological_process | DNA damage response |
B | 0009313 | biological_process | oligosaccharide catabolic process |
B | 0015926 | molecular_function | glucosidase activity |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0046872 | molecular_function | metal ion binding |
B | 1902687 | cellular_component | glucosidase complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA A 1001 |
Chain | Residue |
A | ASP431 |
A | ASN433 |
A | ASN435 |
A | GLU439 |
A | GLU549 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA B 1001 |
Chain | Residue |
B | GLU549 |
B | ASP431 |
B | ASN433 |
B | ASN435 |
B | GLU439 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 2001 |
Chain | Residue |
A | PRO308 |
A | PHE315 |
A | TRP321 |
A | ASP324 |
A | LYS391 |
A | PHE742 |
A | TRP744 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 2002 |
Chain | Residue |
A | TRP321 |
A | ASP368 |
A | LYS391 |
A | TRP496 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 2001 |
Chain | Residue |
B | PRO308 |
B | PHE315 |
B | TRP321 |
B | ASP324 |
B | LYS391 |
B | PHE742 |
B | TRP744 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 2002 |
Chain | Residue |
B | TRP321 |
B | ASP368 |
B | LYS391 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton donor => ECO:0000250 |
Chain | Residue | Details |
A | ASP501 | |
B | ASP501 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor => ECO:0000250 |
Chain | Residue | Details |
A | GLU727 | |
B | GLU727 |
site_id | SWS_FT_FI3 |
Number of Residues | 12 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP431 | |
B | VAL437 | |
B | GLU439 | |
B | GLU549 | |
A | ASN433 | |
A | ASN435 | |
A | VAL437 | |
A | GLU439 | |
A | GLU549 | |
B | ASP431 | |
B | ASN433 | |
B | ASN435 |