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3D3F

Crystal Structure of Yvgn and cofactor NADPH from Bacillus subtilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0004033molecular_functionaldo-keto reductase (NADPH) activity
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0043892molecular_functionmethylglyoxal reductase (NADPH) activity
B0004033molecular_functionaldo-keto reductase (NADPH) activity
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0043892molecular_functionmethylglyoxal reductase (NADPH) activity
Functional Information from PDB Data
site_idAC1
Number of Residues29
DetailsBINDING SITE FOR RESIDUE NDP A 1
ChainResidue
AGLY23
AGLN163
ATRP189
ASER190
APRO191
ALEU192
AMET193
AGLN194
ALEU198
AALA215
AILE230
AVAL24
APRO231
ALYS232
ASER233
AILE234
ALYS235
AARG238
AGLU241
AASN242
AHOH284
AHOH296
APHE25
AASP49
ATYR54
ALYS79
AHIS112
ASER141
AASN142

site_idAC2
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NDP B 1
ChainResidue
BGLY23
BVAL24
BPHE25
BASP49
BTYR54
BLYS79
BHIS112
BSER141
BASN142
BGLN163
BTRP189
BSER190
BPRO191
BLEU192
BMET193
BGLN194
BLEU198
BILE230
BPRO231
BLYS232
BSER233
BILE234
BLYS235
BARG238
BASN242
BHOH321

Functional Information from PROSITE/UniProt
site_idPS00062
Number of Residues18
DetailsALDOKETO_REDUCTASE_2 Aldo/keto reductase family signature 2. LeklykdgkIRAIGVSNF
ChainResidueDetails
ALEU126-PHE143

site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. IPKSIKehRIiENaDI
ChainResidueDetails
AILE230-ILE245

site_idPS00798
Number of Residues18
DetailsALDOKETO_REDUCTASE_1 Aldo/keto reductase family signature 1. GYRSIDTAaiyknEegVG
ChainResidueDetails
AGLY44-GLY61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250
ChainResidueDetails
ATYR54
BTYR54

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS112
ASER190
BHIS112
BSER190

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mrq
ChainResidueDetails
ATYR54
ALYS79
AASP49
AHIS112

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mrq
ChainResidueDetails
BTYR54
BLYS79
BASP49
BHIS112

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mrq
ChainResidueDetails
ATYR54
ALYS79

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mrq
ChainResidueDetails
BTYR54
BLYS79

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PDB entries from 2024-08-28

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