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3D2V

Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate

Functional Information from PDB Data
site_id1
Number of Residues
Details
ChainResidue

site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 78
ChainResidue
APYI84
AHOH94
AHOH96
AHOH98
AHOH341

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 79
ChainResidue
AHOH345
BHOH98
AC51
AA52
AHOH88
AHOH108

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 80
ChainResidue
AU41
AG42
AC65
AHOH167
AHOH332

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 81
ChainResidue
AG48
AG66
APYI84
AHOH85
AHOH89
AHOH339

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 82
ChainResidue
AA29
AHOH114
AHOH151
AHOH208
AHOH319
AHOH321

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 83
ChainResidue
AG48
AHOH107
AHOH258
BHOH118
BHOH296

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 78
ChainResidue
AHOH102
BC51
BA52
BHOH88
BHOH111
BHOH300

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 79
ChainResidue
BPYI82
BHOH87
BHOH180
BHOH315
BHOH316

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 80
ChainResidue
BG48
BG66
BPYI82
BHOH83
BHOH89
BHOH314

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 81
ChainResidue
AHOH236
BA29
BHOH90
BHOH127
BHOH172
BHOH182

site_idBC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE PYI A 84
ChainResidue
AG11
AU12
AG28
AG30
AA31
AA43
AC45
AG60
AC61
AC65
AG66
AMG78
AMG81
AHOH93
AHOH94
AHOH101
AHOH142
AHOH144
AHOH339
AHOH341

site_idBC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE PYI B 82
ChainResidue
BHOH331
BG11
BU12
BG28
BG30
BA31
BA43
BC45
BG60
BC61
BC65
BG66
BMG79
BMG80
BHOH83
BHOH87
BHOH96
BHOH104
BHOH120
BHOH135
BHOH153
BHOH162
BHOH314
BHOH315

223532

PDB entries from 2024-08-07

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