3D04
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with sakuranetin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0006633 | biological_process | fatty acid biosynthetic process |
A | 0009245 | biological_process | lipid A biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0016836 | molecular_function | hydro-lyase activity |
A | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006633 | biological_process | fatty acid biosynthetic process |
B | 0009245 | biological_process | lipid A biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0016836 | molecular_function | hydro-lyase activity |
B | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006633 | biological_process | fatty acid biosynthetic process |
C | 0009245 | biological_process | lipid A biosynthetic process |
C | 0016829 | molecular_function | lyase activity |
C | 0016836 | molecular_function | hydro-lyase activity |
C | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006633 | biological_process | fatty acid biosynthetic process |
D | 0009245 | biological_process | lipid A biosynthetic process |
D | 0016829 | molecular_function | lyase activity |
D | 0016836 | molecular_function | hydro-lyase activity |
D | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0006633 | biological_process | fatty acid biosynthetic process |
E | 0009245 | biological_process | lipid A biosynthetic process |
E | 0016829 | molecular_function | lyase activity |
E | 0016836 | molecular_function | hydro-lyase activity |
E | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006633 | biological_process | fatty acid biosynthetic process |
F | 0009245 | biological_process | lipid A biosynthetic process |
F | 0016829 | molecular_function | lyase activity |
F | 0016836 | molecular_function | hydro-lyase activity |
F | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 160 |
Chain | Residue |
A | HIS58 |
A | GLY67 |
A | SAK163 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 160 |
Chain | Residue |
A | HOH164 |
B | HIS58 |
B | GLY67 |
site_id | AC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL C 160 |
Chain | Residue |
C | GLY67 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL D 160 |
Chain | Residue |
D | HIS58 |
D | GLY67 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL E 160 |
Chain | Residue |
E | GLY67 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL F 160 |
Chain | Residue |
F | GLY67 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BEN A 161 |
Chain | Residue |
A | GLN40 |
A | GLU124 |
A | VAL125 |
E | THR138 |
E | GLU148 |
E | BEN162 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BEN A 162 |
Chain | Residue |
A | THR138 |
A | GLU148 |
E | GLN40 |
E | GLU124 |
E | VAL125 |
E | HOH307 |
site_id | AC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SAK A 163 |
Chain | Residue |
A | PHE59 |
A | PHE109 |
A | ARG110 |
A | ILE111 |
A | PRO112 |
A | CL160 |
B | ILE98 |
B | TYR100 |
B | ARG158 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BEN C 161 |
Chain | Residue |
C | ALA38 |
C | THR84 |
C | SER85 |
C | LEU86 |
C | TRP87 |
C | GLY88 |
D | GLN40 |
site_id | BC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE SAK C 162 |
Chain | Residue |
C | ILE20 |
C | PRO22 |
C | HIS23 |
C | PHE83 |
C | LYS97 |
C | ILE98 |
C | VAL99 |
C | ARG158 |
C | HOH215 |
D | PHE59 |
D | LYS62 |
D | ILE64 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BEN E 161 |
Chain | Residue |
B | TRP87 |
B | GLY88 |
E | LEU86 |
E | TRP87 |
E | MET131 |
E | HOH305 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BEN E 162 |
Chain | Residue |
A | GLU150 |
A | BEN161 |
E | GLY136 |
E | GLY137 |
E | ALA149 |
E | GLU150 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BEN F 161 |
Chain | Residue |
A | MET131 |
A | MET154 |
F | TRP87 |
F | ASP90 |
F | ILE93 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
A | GLU72 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
B | GLU72 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
C | GLU72 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
D | GLU72 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
E | GLU72 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
F | GLU72 |