3CPE
Crystal Structure of T4 gp17
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004518 | molecular_function | nuclease activity |
| A | 0004519 | molecular_function | endonuclease activity |
| A | 0004536 | molecular_function | DNA nuclease activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006259 | biological_process | DNA metabolic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016887 | molecular_function | ATP hydrolysis activity |
| A | 0019072 | biological_process | viral genome packaging |
| A | 0019073 | biological_process | viral DNA genome packaging |
| A | 0046797 | biological_process | viral procapsid maturation |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051276 | biological_process | chromosome organization |
| A | 0098009 | cellular_component | viral terminase, large subunit |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PO4 A 568 |
| Chain | Residue |
| A | HIS385 |
| A | TYR410 |
| A | HIS430 |
| A | ASN432 |
| A | HIS516 |
| A | ALA518 |
| A | HOH686 |
| A | HOH716 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE PO4 A 569 |
| Chain | Residue |
| A | SER435 |
| A | HIS436 |
| A | ARG406 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 64 |
| Details | Region: {"description":"ssDNA-binding","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"9533879","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 170 |
| Details | Region: {"description":"ATPase activity","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12235385","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 24 |
| Details | Region: {"description":"Binding to the portal protein","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22345478","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 199 |
| Details | Region: {"description":"Nuclease activity","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12235385","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | Motif: {"description":"Walker A motif","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11846554","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12235385","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 5 |
| Details | Motif: {"description":"Walker B motif","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12235385","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Motif: {"description":"ATPase coupling","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12235385","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Active site: {"description":"For ATPase activity","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12875841","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17386269","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"17386269","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18627466","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"19109896","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 1 |
| Details | Site: {"description":"Modulates nuclease activity","evidences":[{"source":"HAMAP-Rule","id":"MF_04146","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18627466","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
