3COS
Crystal structure of human class II alcohol dehydrogenase (ADH4) in complex with NAD and Zn
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001523 | biological_process | retinoid metabolic process |
A | 0003960 | molecular_function | NADPH:quinone reductase activity |
A | 0004022 | molecular_function | alcohol dehydrogenase (NAD+) activity |
A | 0004024 | molecular_function | alcohol dehydrogenase (NAD+) activity, zinc-dependent |
A | 0004032 | molecular_function | aldose reductase (NADPH) activity |
A | 0004745 | molecular_function | all-trans-retinol dehydrogenase (NAD+) activity |
A | 0005503 | molecular_function | all-trans retinal binding |
A | 0005515 | molecular_function | protein binding |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006066 | biological_process | alcohol metabolic process |
A | 0006067 | biological_process | ethanol metabolic process |
A | 0006081 | biological_process | cellular aldehyde metabolic process |
A | 0006629 | biological_process | lipid metabolic process |
A | 0008270 | molecular_function | zinc ion binding |
A | 0010430 | biological_process | fatty acid omega-oxidation |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0018479 | molecular_function | benzaldehyde dehydrogenase (NAD+) activity |
A | 0019841 | molecular_function | retinol binding |
A | 0042572 | biological_process | retinol metabolic process |
A | 0046164 | biological_process | alcohol catabolic process |
A | 0046294 | biological_process | formaldehyde catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0051287 | molecular_function | NAD binding |
A | 0051903 | molecular_function | S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity |
A | 1901661 | biological_process | quinone metabolic process |
B | 0001523 | biological_process | retinoid metabolic process |
B | 0003960 | molecular_function | NADPH:quinone reductase activity |
B | 0004022 | molecular_function | alcohol dehydrogenase (NAD+) activity |
B | 0004024 | molecular_function | alcohol dehydrogenase (NAD+) activity, zinc-dependent |
B | 0004032 | molecular_function | aldose reductase (NADPH) activity |
B | 0004745 | molecular_function | all-trans-retinol dehydrogenase (NAD+) activity |
B | 0005503 | molecular_function | all-trans retinal binding |
B | 0005515 | molecular_function | protein binding |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006066 | biological_process | alcohol metabolic process |
B | 0006067 | biological_process | ethanol metabolic process |
B | 0006081 | biological_process | cellular aldehyde metabolic process |
B | 0006629 | biological_process | lipid metabolic process |
B | 0008270 | molecular_function | zinc ion binding |
B | 0010430 | biological_process | fatty acid omega-oxidation |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0018479 | molecular_function | benzaldehyde dehydrogenase (NAD+) activity |
B | 0019841 | molecular_function | retinol binding |
B | 0042572 | biological_process | retinol metabolic process |
B | 0046164 | biological_process | alcohol catabolic process |
B | 0046294 | biological_process | formaldehyde catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0051287 | molecular_function | NAD binding |
B | 0051903 | molecular_function | S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity |
B | 1901661 | biological_process | quinone metabolic process |
C | 0001523 | biological_process | retinoid metabolic process |
C | 0003960 | molecular_function | NADPH:quinone reductase activity |
C | 0004022 | molecular_function | alcohol dehydrogenase (NAD+) activity |
C | 0004024 | molecular_function | alcohol dehydrogenase (NAD+) activity, zinc-dependent |
C | 0004032 | molecular_function | aldose reductase (NADPH) activity |
C | 0004745 | molecular_function | all-trans-retinol dehydrogenase (NAD+) activity |
C | 0005503 | molecular_function | all-trans retinal binding |
C | 0005515 | molecular_function | protein binding |
C | 0005654 | cellular_component | nucleoplasm |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006066 | biological_process | alcohol metabolic process |
C | 0006067 | biological_process | ethanol metabolic process |
C | 0006081 | biological_process | cellular aldehyde metabolic process |
C | 0006629 | biological_process | lipid metabolic process |
C | 0008270 | molecular_function | zinc ion binding |
C | 0010430 | biological_process | fatty acid omega-oxidation |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0018479 | molecular_function | benzaldehyde dehydrogenase (NAD+) activity |
C | 0019841 | molecular_function | retinol binding |
C | 0042572 | biological_process | retinol metabolic process |
C | 0046164 | biological_process | alcohol catabolic process |
C | 0046294 | biological_process | formaldehyde catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0051287 | molecular_function | NAD binding |
C | 0051903 | molecular_function | S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity |
C | 1901661 | biological_process | quinone metabolic process |
D | 0001523 | biological_process | retinoid metabolic process |
D | 0003960 | molecular_function | NADPH:quinone reductase activity |
D | 0004022 | molecular_function | alcohol dehydrogenase (NAD+) activity |
D | 0004024 | molecular_function | alcohol dehydrogenase (NAD+) activity, zinc-dependent |
D | 0004032 | molecular_function | aldose reductase (NADPH) activity |
D | 0004745 | molecular_function | all-trans-retinol dehydrogenase (NAD+) activity |
D | 0005503 | molecular_function | all-trans retinal binding |
D | 0005515 | molecular_function | protein binding |
D | 0005654 | cellular_component | nucleoplasm |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006066 | biological_process | alcohol metabolic process |
D | 0006067 | biological_process | ethanol metabolic process |
D | 0006081 | biological_process | cellular aldehyde metabolic process |
D | 0006629 | biological_process | lipid metabolic process |
D | 0008270 | molecular_function | zinc ion binding |
D | 0010430 | biological_process | fatty acid omega-oxidation |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0018479 | molecular_function | benzaldehyde dehydrogenase (NAD+) activity |
D | 0019841 | molecular_function | retinol binding |
D | 0042572 | biological_process | retinol metabolic process |
D | 0046164 | biological_process | alcohol catabolic process |
D | 0046294 | biological_process | formaldehyde catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0051287 | molecular_function | NAD binding |
D | 0051903 | molecular_function | S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity |
D | 1901661 | biological_process | quinone metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN A 501 |
Chain | Residue |
A | CYS47 |
A | HIS69 |
A | CYS180 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 502 |
Chain | Residue |
A | CYS99 |
A | CYS102 |
A | CYS105 |
A | CYS113 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN B 501 |
Chain | Residue |
B | CYS180 |
B | CYS47 |
B | HIS69 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 502 |
Chain | Residue |
B | CYS99 |
B | CYS102 |
B | CYS105 |
B | CYS113 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN C 501 |
Chain | Residue |
C | CYS47 |
C | HIS69 |
C | CYS180 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 502 |
Chain | Residue |
C | CYS99 |
C | CYS102 |
C | CYS105 |
C | CYS113 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN D 501 |
Chain | Residue |
D | CYS47 |
D | HIS69 |
D | CYS180 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 502 |
Chain | Residue |
D | CYS99 |
D | CYS102 |
D | CYS105 |
D | CYS113 |
site_id | AC9 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE NAD A 400 |
Chain | Residue |
A | HIS48 |
A | THR49 |
A | CYS180 |
A | THR184 |
A | GLY205 |
A | GLY207 |
A | GLY208 |
A | ASP229 |
A | LYS234 |
A | CYS274 |
A | ALA275 |
A | THR280 |
A | ILE298 |
A | GLY299 |
A | THR323 |
A | PHE324 |
A | PHE325 |
A | ARG375 |
site_id | BC1 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE NAD B 400 |
Chain | Residue |
B | HIS48 |
B | THR49 |
B | CYS180 |
B | THR184 |
B | GLY205 |
B | GLY207 |
B | GLY208 |
B | ASP229 |
B | LYS234 |
B | CYS274 |
B | ALA275 |
B | THR280 |
B | ILE298 |
B | GLY299 |
B | THR323 |
B | PHE324 |
B | PHE325 |
B | ARG375 |
site_id | BC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE NAD C 400 |
Chain | Residue |
C | HIS48 |
C | THR49 |
C | CYS180 |
C | THR184 |
C | GLY205 |
C | GLY207 |
C | GLY208 |
C | ASP229 |
C | ILE230 |
C | LYS234 |
C | CYS274 |
C | ALA275 |
C | THR280 |
C | ILE298 |
C | GLY299 |
C | THR323 |
C | PHE324 |
C | PHE325 |
C | ARG375 |
site_id | BC3 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE NAD D 400 |
Chain | Residue |
D | THR323 |
D | PHE324 |
D | PHE325 |
D | ARG375 |
D | HIS48 |
D | THR49 |
D | CYS180 |
D | THR184 |
D | GLY205 |
D | GLY207 |
D | GLY208 |
D | ILE228 |
D | ASP229 |
D | ILE230 |
D | LYS234 |
D | CYS274 |
D | ALA275 |
D | THR280 |
D | ILE298 |
D | GLY299 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 503 |
Chain | Residue |
A | SER124 |
A | ASP125 |
A | GLN126 |
A | GLN127 |
A | LEU128 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 503 |
Chain | Residue |
B | PHE204 |
B | ILE228 |
B | PRO249 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 504 |
Chain | Residue |
B | SER124 |
B | ASP125 |
B | GLN126 |
B | GLN127 |
B | LEU128 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 503 |
Chain | Residue |
D | SER124 |
D | ASP125 |
D | GLN126 |
D | GLN127 |
D | LEU128 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 504 |
Chain | Residue |
A | PHE204 |
A | PRO249 |
A | ILE256 |
A | ALA283 |
site_id | BC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 503 |
Chain | Residue |
C | PHE204 |
C | PRO249 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO D 504 |
Chain | Residue |
D | PHE204 |
D | ILE228 |
D | PRO249 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ACY A 401 |
Chain | Residue |
A | CYS47 |
A | THR49 |
A | HIS69 |
A | TYR95 |
A | PHE147 |
A | CYS180 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACY B 401 |
Chain | Residue |
B | THR49 |
B | HIS69 |
B | TYR95 |
B | PHE147 |
B | CYS180 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ACY C 401 |
Chain | Residue |
C | THR49 |
C | HIS69 |
C | TYR95 |
C | PHE147 |
C | CYS180 |
site_id | CC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ACY D 401 |
Chain | Residue |
D | CYS47 |
D | THR49 |
D | HIS69 |
D | TYR95 |
D | PHE147 |
D | CYS180 |
site_id | CC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACY B 505 |
Chain | Residue |
A | SER304 |
B | GLU312 |
Functional Information from PROSITE/UniProt
site_id | PS00059 |
Number of Residues | 15 |
Details | ADH_ZINC Zinc-containing alcohol dehydrogenases signature. GHEaAGIvesiGpgV |
Chain | Residue | Details |
A | GLY68-VAL82 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 28 |
Details | BINDING: |
Chain | Residue | Details |
A | CYS47 | |
B | CYS99 | |
B | CYS102 | |
B | CYS105 | |
B | CYS113 | |
B | CYS180 | |
C | CYS47 | |
C | HIS69 | |
C | CYS99 | |
C | CYS102 | |
C | CYS105 | |
A | HIS69 | |
C | CYS113 | |
C | CYS180 | |
D | CYS47 | |
D | HIS69 | |
D | CYS99 | |
D | CYS102 | |
D | CYS105 | |
D | CYS113 | |
D | CYS180 | |
A | CYS99 | |
A | CYS102 | |
A | CYS105 | |
A | CYS113 | |
A | CYS180 | |
B | CYS47 | |
B | HIS69 |
site_id | SWS_FT_FI2 |
Number of Residues | 28 |
Details | BINDING: BINDING => ECO:0000269|Ref.11 |
Chain | Residue | Details |
A | HIS48 | |
B | ASP229 | |
B | LYS234 | |
B | ILE298 | |
B | THR323 | |
B | ARG375 | |
C | HIS48 | |
C | GLY205 | |
C | ASP229 | |
C | LYS234 | |
C | ILE298 | |
A | GLY205 | |
C | THR323 | |
C | ARG375 | |
D | HIS48 | |
D | GLY205 | |
D | ASP229 | |
D | LYS234 | |
D | ILE298 | |
D | THR323 | |
D | ARG375 | |
A | ASP229 | |
A | LYS234 | |
A | ILE298 | |
A | THR323 | |
A | ARG375 | |
B | HIS48 | |
B | GLY205 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
A | SER121 | |
A | SER278 | |
B | SER121 | |
B | SER278 | |
C | SER121 | |
C | SER278 | |
D | SER121 | |
D | SER278 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
A | HIS48 | |
A | THR49 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
B | HIS48 | |
B | THR49 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
C | HIS48 | |
C | THR49 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
D | HIS48 | |
D | THR49 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
A | PHE58 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
B | PHE58 |
site_id | CSA7 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
C | PHE58 |
site_id | CSA8 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1teh |
Chain | Residue | Details |
D | PHE58 |