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3CH0

Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0006629biological_processlipid metabolic process
A0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE CIT A 272
ChainResidue
AHIS13
ATRP241
AHOH300
AHOH538
AHOH668
AARG14
AGLU40
AASP42
AHIS55
AGLU135
ALYS137
APHE175
ALEU195

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 273
ChainResidue
AHIS60
AHIS61
AGLU62
AHOH544

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 274
ChainResidue
ATYR182
AGLN186
AGLU197
AASP219
ATHR221
AHOH385
AHOH583

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 275
ChainResidue
AASP219
ATRP241
ATHR242
AHOH373
AHOH466

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 276
ChainResidue
ALEU206
ALEU209
ASER210
APHE211
ATHR212
AHOH524

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 277
ChainResidue
ALYS30
AGLU92
AILE93
AASP94
AHOH330
AHOH625

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 278
ChainResidue
ATHR242
AASN244
AGLU248
AHOH364

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 279
ChainResidue
AARG17
AARG102
ATHR242
AASN244
AASP263
AHOH484
AHOH505

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 280
ChainResidue
AASP155
AALA159
ALYS162
ATYR187
ALYS199
AHOH532
AHOH617

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 281
ChainResidue
AASP155
ALYS199
AHOH459
AHOH616

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 282
ChainResidue
AGLU141
AGLU250
ATHR251
ASER254
AHOH467
AHOH570
AHOH649
AHOH683

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 283
ChainResidue
AALA26
AHOH360
AHOH502

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 284
ChainResidue
ALEU19
ALYS30
AASP68
AGLY69
ALYS107
AHOH292
AHOH378
AHOH508

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 285
ChainResidue
ASER7
AGLN131
AHOH453

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 286
ChainResidue
AARG102
APHE103
ALYS104
ASER105
ATYR264
AHOH418
AHOH677

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 287
ChainResidue
AGLU92
AASP94
AHOH423
AHOH458

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 288
ChainResidue
AHOH676
AGLU207
ALEU209
ASER210

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 289
ChainResidue
AARG14
AARG17
AHIS55
AARG102
AHOH300

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PDB entries from 2024-06-12

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