3CD0
Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004420 | molecular_function | hydroxymethylglutaryl-CoA reductase (NADPH) activity |
| A | 0005789 | cellular_component | endoplasmic reticulum membrane |
| A | 0008299 | biological_process | isoprenoid biosynthetic process |
| A | 0015936 | biological_process | coenzyme A metabolic process |
| A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| A | 0050661 | molecular_function | NADP binding |
| B | 0004420 | molecular_function | hydroxymethylglutaryl-CoA reductase (NADPH) activity |
| B | 0005789 | cellular_component | endoplasmic reticulum membrane |
| B | 0008299 | biological_process | isoprenoid biosynthetic process |
| B | 0015936 | biological_process | coenzyme A metabolic process |
| B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| B | 0050661 | molecular_function | NADP binding |
| C | 0004420 | molecular_function | hydroxymethylglutaryl-CoA reductase (NADPH) activity |
| C | 0005789 | cellular_component | endoplasmic reticulum membrane |
| C | 0008299 | biological_process | isoprenoid biosynthetic process |
| C | 0015936 | biological_process | coenzyme A metabolic process |
| C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| C | 0050661 | molecular_function | NADP binding |
| D | 0004420 | molecular_function | hydroxymethylglutaryl-CoA reductase (NADPH) activity |
| D | 0005789 | cellular_component | endoplasmic reticulum membrane |
| D | 0008299 | biological_process | isoprenoid biosynthetic process |
| D | 0015936 | biological_process | coenzyme A metabolic process |
| D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| D | 0050661 | molecular_function | NADP binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 22 |
| Details | BINDING SITE FOR RESIDUE 6HI B 1 |
| Chain | Residue |
| A | GLU559 |
| A | ALA856 |
| A | LEU857 |
| A | HIS861 |
| B | ARG590 |
| B | MET657 |
| B | SER661 |
| B | SER684 |
| B | ASN686 |
| B | ASP690 |
| B | LYS691 |
| A | GLY560 |
| B | LYS692 |
| B | HOH905 |
| B | HOH1042 |
| A | ALA564 |
| A | SER565 |
| A | ARG568 |
| A | LYS735 |
| A | ALA751 |
| A | ASN755 |
| A | LEU853 |
| site_id | AC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE 6HI B 2 |
| Chain | Residue |
| A | ARG590 |
| A | SER661 |
| A | SER684 |
| A | ASN686 |
| A | ASP690 |
| A | LYS691 |
| A | LYS692 |
| B | GLU559 |
| B | GLY560 |
| B | ALA564 |
| B | SER565 |
| B | ARG568 |
| B | LYS735 |
| B | ALA751 |
| B | ASN755 |
| B | LEU853 |
| B | ALA856 |
| B | HOH879 |
| B | HOH1040 |
| site_id | AC3 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE 6HI D 3 |
| Chain | Residue |
| C | GLU559 |
| C | GLY560 |
| C | ALA564 |
| C | SER565 |
| C | LYS735 |
| C | ALA751 |
| C | HIS752 |
| C | ASN755 |
| C | LEU853 |
| D | ARG590 |
| D | MET657 |
| D | SER661 |
| D | SER684 |
| D | ASP690 |
| D | LYS691 |
| D | LYS692 |
| D | HOH890 |
| site_id | AC4 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE 6HI C 4 |
| Chain | Residue |
| C | ARG590 |
| C | SER684 |
| C | ASP690 |
| C | LYS691 |
| C | LYS692 |
| C | HOH880 |
| C | HOH970 |
| D | GLU559 |
| D | GLY560 |
| D | LEU562 |
| D | ALA564 |
| D | SER565 |
| D | ARG568 |
| D | LYS735 |
| D | ALA751 |
| D | ASN755 |
| D | LEU853 |
| D | ALA856 |
| D | HOH1041 |
Functional Information from PROSITE/UniProt
| site_id | PS00066 |
| Number of Residues | 15 |
| Details | HMG_COA_REDUCTASE_1 Hydroxymethylglutaryl-coenzyme A reductases signature 1. RfQSrSGDaMGmNmI |
| Chain | Residue | Details |
| A | ARG646-ILE660 |
| site_id | PS00318 |
| Number of Residues | 8 |
| Details | HMG_COA_REDUCTASE_2 Hydroxymethylglutaryl-coenzyme A reductases signature 2. IGtVGGGT |
| Chain | Residue | Details |
| A | ILE802-THR809 |
| site_id | PS01192 |
| Number of Residues | 14 |
| Details | HMG_COA_REDUCTASE_3 Hydroxymethylglutaryl-coenzyme A reductases signature 3. ALaAghLvKSHMiH |
| Chain | Residue | Details |
| A | ALA856-HIS869 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 12 |
| Details | Active site: {"description":"Charge relay system","evidences":[{"source":"PubMed","id":"10698924","evidenceCode":"ECO:0000303"},{"source":"PubMed","id":"11349148","evidenceCode":"ECO:0000303"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 72 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"11349148","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1DQA","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| A | LYS691 | |
| A | ASP767 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| B | LYS691 | |
| B | ASP767 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| C | LYS691 | |
| C | ASP767 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| D | LYS691 | |
| D | ASP767 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| A | GLU559 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| B | GLU559 |
| site_id | CSA7 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| C | GLU559 |
| site_id | CSA8 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqa |
| Chain | Residue | Details |
| D | GLU559 |
| site_id | MCSA1 |
| Number of Residues | 3 |
| Details | M-CSA 93 |
| Chain | Residue | Details |
| A | GLU559 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| A | LYS691 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor |
| A | ASP767 | activator, electrostatic stabiliser, hydrogen bond acceptor |
| site_id | MCSA2 |
| Number of Residues | 3 |
| Details | M-CSA 93 |
| Chain | Residue | Details |
| B | GLU559 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| B | LYS691 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor |
| B | ASP767 | activator, electrostatic stabiliser, hydrogen bond acceptor |
| site_id | MCSA3 |
| Number of Residues | 3 |
| Details | M-CSA 93 |
| Chain | Residue | Details |
| C | GLU559 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| C | LYS691 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor |
| C | ASP767 | activator, electrostatic stabiliser, hydrogen bond acceptor |
| site_id | MCSA4 |
| Number of Residues | 3 |
| Details | M-CSA 93 |
| Chain | Residue | Details |
| D | GLU559 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
| D | LYS691 | electrostatic stabiliser, hydrogen bond donor, proton acceptor, proton donor |
| D | ASP767 | activator, electrostatic stabiliser, hydrogen bond acceptor |
