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3BWV

Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0008253molecular_function5'-nucleotidase activity
A0009223biological_processpyrimidine deoxyribonucleotide catabolic process
A0009264biological_processdeoxyribonucleotide catabolic process
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0008253molecular_function5'-nucleotidase activity
B0009223biological_processpyrimidine deoxyribonucleotide catabolic process
B0009264biological_processdeoxyribonucleotide catabolic process
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 300
ChainResidue
AASP9
AASP11
AASP135
AHOH374
AHOH378
AHOH384

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 300
ChainResidue
BHOH383
BHOH386
BHOH387
BASP9
BASP11
BASP135

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Nucleophile","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PDB","id":"3BWV","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1q91
ChainResidueDetails
AASP11

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1q91
ChainResidueDetails
BASP11

246704

PDB entries from 2025-12-24

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