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3BVD

Structure of Surface-engineered Cytochrome ba3 Oxidase from Thermus thermophilus under Xenon Pressure, 100psi 5min

Functional Information from GO Data
ChainGOidnamespacecontents
A0004129molecular_functioncytochrome-c oxidase activity
A0005886cellular_componentplasma membrane
A0006119biological_processoxidative phosphorylation
A0009060biological_processaerobic respiration
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A1902600biological_processproton transmembrane transport
B0004129molecular_functioncytochrome-c oxidase activity
B0005507molecular_functioncopper ion binding
B0005886cellular_componentplasma membrane
B0016020cellular_componentmembrane
B0046872molecular_functionmetal ion binding
B1902600biological_processproton transmembrane transport
C0004129molecular_functioncytochrome-c oxidase activity
C0005886cellular_componentplasma membrane
C1902600biological_processproton transmembrane transport
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CU A 803
ChainResidue
AHIS233
AHIS282
AHIS283

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEM A 800
ChainResidue
ALEU69
AHIS72
AASN76
AALA77
ATYR133
APHE385
AHIS386
AVAL389
AALA390
ATHR394
AMET432
AARG449
AARG450
AALA451
AGLY39
APRO40
AGLN42
AALA43
ATYR46
ATYR65

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HAS A 801
ChainResidue
ATYR133
ATRP229
AVAL236
ATYR237
ATRP239
AHIS282
ATHR302
ASER309
AALA313
AALA317
ALEU353
ALEU354
APHE356
AGLY360
AGLY363
AASN366
AALA367
AASP372
AHIS376
AVAL381
AHIS384
APHE385
AGLN388
AARG449

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CUA B 802
ChainResidue
BHIS114
BCYS149
BGLN151
BCYS153
BHIS157
BMET160

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE XE A 805
ChainResidue
ATYR133
AGLY232

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE XE A 807
ChainResidue
ALEU208

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE XE A 808
ChainResidue
AVAL201

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE XE A 809
ChainResidue
APHE228
AXE810

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE XE A 810
ChainResidue
APHE228
AGLY232
AXE809

Functional Information from PROSITE/UniProt
site_idPS00077
Number of Residues55
DetailsCOX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WWTGHPiVyfwllpayaiiytilpkqaggrlvsdpmarlafllflllstpvgf..HH
ChainResidueDetails
ATRP229-HIS283

site_idPS00078
Number of Residues49
DetailsCOX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHgfhvegtninvevlpgevstvrytfkrpgeyrii......CnqyCglgHqnM
ChainResidueDetails
BVAL112-MET160

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsTRANSMEM: Helical
ChainResidueDetails
CLYS4-GLY34
APHE385-LEU405
ALEU420-HIS440
AVAL471-VAL491
AILE527-VAL547
AVAL74-ALA94
ALEU105-LEU125
AALA144-LEU164
AVAL187-PHE207
ALEU227-ILE247
ALEU267-ASP287
AVAL300-LEU320
AALA345-VAL365

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N-formylmethionine => ECO:0000269|PubMed:11152118
ChainResidueDetails
CMET1
AHIS384
AHIS386

site_idSWS_FT_FI3
Number of Residues129
DetailsTOPO_DOM: Periplasmic
ChainResidueDetails
BTHR39-GLU168
ATYR237

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING:
ChainResidueDetails
BHIS114
BCYS149
BCYS153
BHIS157

site_idSWS_FT_FI5
Number of Residues2
DetailsCROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr)
ChainResidueDetails
AHIS233
ATYR237

Catalytic Information from CSA
site_idCSA1
Number of Residues7
DetailsAnnotated By Reference To The Literature 1ehk
ChainResidueDetails
AHIS384
AARG449
ATYR237
AHIS386
APHE385
AHIS233
AARG450

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ehk
ChainResidueDetails
BPHE86
BPHE88

site_idMCSA1
Number of Residues2
DetailsM-CSA 735
ChainResidueDetails
BPHE86electron shuttle
BPHE88electron shuttle
AHIS384electron shuttle
APHE385electron shuttle
AHIS386electron shuttle
AARG449electron shuttle
AARG450electron shuttle

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PDB entries from 2024-09-18

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