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3BUI

Golgi mannosidase II D204A catalytic nucleophile mutant complex with Tris

Functional Information from GO Data
ChainGOidnamespacecontents
A0000139cellular_componentGolgi membrane
A0003824molecular_functioncatalytic activity
A0004559molecular_functionalpha-mannosidase activity
A0004572molecular_functionmannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity
A0005783cellular_componentendoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0005795cellular_componentGolgi stack
A0005975biological_processcarbohydrate metabolic process
A0006013biological_processmannose metabolic process
A0006486biological_processprotein glycosylation
A0006491biological_processN-glycan processing
A0015923molecular_functionmannosidase activity
A0016020cellular_componentmembrane
A0016063biological_processrhodopsin biosynthetic process
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0030246molecular_functioncarbohydrate binding
A0035010biological_processencapsulation of foreign target
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 1046
ChainResidue
AHIS90
AASP92
AHIS471

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TRS A 1047
ChainResidue
AASP341
AHIS471
AASP472
AHOH2265
AHOH2282
AHOH2444
AHIS90
AASP92
ATRP95
AALA204
AARG228
ATYR269

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MPD A 1048
ChainResidue
ALYS63
AGLN64
ATYR267
AHIS273
AHOH1143
AHOH1597
AHOH1599
AHOH1601

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MPD A 1049
ChainResidue
ATYR435
AGLN491
ALEU494
ALYS495
AGLN498
ALEU526
ATRP531
AHOH1488
AHOH2263

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MPD A 1050
ChainResidue
AASP106
AASP341
APHE342
AHOH1191
AHOH1717
AHOH1718
AHOH2342

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 1051
ChainResidue
ALYS495
AALA496
AHOH1218
AHOH1494
AHOH1499
AHOH2065

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000250
ChainResidueDetails
AALA204

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS90
AASP92
AALA204
AHIS471

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 793
ChainResidueDetails
AHIS90metal ligand
AASP92metal ligand
AALA204covalently attached, metal ligand, nucleofuge, nucleophile
AASP341activator, increase nucleophilicity, proton acceptor, proton donor
AHIS471metal ligand

224004

PDB entries from 2024-08-21

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