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3BOS

Crystal structure of a putative dna replication regulator HDA (SAMA_1916) from Shewanella amazonensis sb2b at 1.75 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0006260biological_processDNA replication
A0006270biological_processDNA replication initiation
A0032297biological_processnegative regulation of DNA-templated DNA replication initiation
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0006260biological_processDNA replication
B0006270biological_processDNA replication initiation
B0032297biological_processnegative regulation of DNA-templated DNA replication initiation
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 301
ChainResidue
ATHR65
ACDP300
AHOH310
AHOH311
AHOH313
AHOH315

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 301
ChainResidue
BHOH312
BHOH313
BHOH320
BTHR65
BCDP300
BHOH311

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SCN A 302
ChainResidue
AARG204
ALYS236
BGLN52
BALA53
BLEU166

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 302
ChainResidue
BGLN52
BVAL132
BGLN135
BLYS136
BARG137
BGLY138

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
BALA124
BASP127
BARG131
BHOH436
BHOH461

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE CDP A 300
ChainResidue
ATYR29
ATYR30
ALYS61
ASER62
AGLY63
AARG64
ATHR65
AHIS66
AARG185
ALEU209
AARG210
APHE213
AMG301
AHOH310
AHOH311
AHOH313
AHOH326
AHOH339
AHOH359
AHOH366

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE CDP B 300
ChainResidue
BTYR29
BTYR30
BLYS61
BSER62
BGLY63
BARG64
BTHR65
BHIS66
BMSE173
BARG185
BLEU209
BARG210
BPHE213
BMG301
BEDO308
BHOH312
BHOH313
BHOH322
BHOH324
BHOH376

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 303
ChainResidue
AARG204
ALEU241
AHOH343
BGLY50

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 304
ChainResidue
AARG199
ALEU202
AASN203
AARG207
AHOH331
BHIS163

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 305
ChainResidue
AILE93
ASER94
AHOH469
BPRO17

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 304
ChainResidue
BASP113
BALA114
BSER145
BHOH318
BHOH454

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 305
ChainResidue
AARG204
BTRP164
BHOH319
BHOH386
BHOH395
BHOH515

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 306
ChainResidue
AASP113
ASER145
AHOH328
AHOH410

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 306
ChainResidue
BSER94
BTHR95
BHOH334
BHOH493
AASP214
BILE93

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 307
ChainResidue
ASER223
AGLN227
BLYS229

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 308
ChainResidue
AGLY48
AGLY50
ALYS136
AGLY138
BPHE200
BARG204
BLYS236

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 309
ChainResidue
ATHR167
BGLU195
BHOH369
BHOH388

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
ASER92
BVAL18
BLEU20
BHIS69

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 308
ChainResidue
BVAL60
BLYS61
BARG210
BCDP300
BHOH341
BHOH403

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 309
ChainResidue
BVAL225
BHOH345
BHOH433
BHOH468
BHOH543

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 310
ChainResidue
BTYR30
BPRO31
BGLU177
BHOH593

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PDB entries from 2024-08-28

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