3BNH
W. succinogenes NrfA Y218F Nitrite Complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005509 | molecular_function | calcium ion binding |
| A | 0009061 | biological_process | anaerobic respiration |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019645 | biological_process | anaerobic electron transport chain |
| A | 0020037 | molecular_function | heme binding |
| A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| A | 0042128 | biological_process | nitrate assimilation |
| A | 0042279 | molecular_function | nitrite reductase (cytochrome, ammonia-forming) activity |
| A | 0042597 | cellular_component | periplasmic space |
| A | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NO2 A 1 |
| Chain | Residue |
| A | ARG114 |
| A | PHE218 |
| A | HIS277 |
| A | HOH518 |
| A | HOH519 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 508 |
| Chain | Residue |
| A | HOH601 |
| A | HOH714 |
| A | GLU217 |
| A | PHE218 |
| A | LYS274 |
| A | GLN276 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ACT A 2 |
| Chain | Residue |
| A | GLY43 |
| A | ILE44 |
| A | GLU45 |
| A | TYR56 |
| A | HOH669 |
| A | HOH792 |
| A | HOH797 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT A 3 |
| Chain | Residue |
| A | ALA192 |
| A | ALA193 |
| A | SER243 |
| A | GLY245 |
| A | HOH1141 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 509 |
| Chain | Residue |
| A | GLY286 |
| A | ILE287 |
| A | ARG347 |
| A | PRO407 |
| A | GLU408 |
| A | HOH807 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE Y1 A 515 |
| Chain | Residue |
| A | GLU52 |
| A | ASP444 |
| A | HOH669 |
| A | HOH792 |
| A | HOH793 |
| A | HOH794 |
| A | HOH797 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE Y1 A 516 |
| Chain | Residue |
| A | PRO99 |
| A | HOH725 |
| A | HOH800 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE Y1 A 517 |
| Chain | Residue |
| A | GLU408 |
| site_id | AC9 |
| Number of Residues | 25 |
| Details | BINDING SITE FOR RESIDUE HEM A 510 |
| Chain | Residue |
| A | TYR96 |
| A | ASN97 |
| A | PRO99 |
| A | ASP108 |
| A | ASN109 |
| A | THR112 |
| A | ARG114 |
| A | THR115 |
| A | LEU126 |
| A | CYS130 |
| A | CYS133 |
| A | LYS134 |
| A | CYS214 |
| A | HIS215 |
| A | PHE218 |
| A | HIS277 |
| A | ALA398 |
| A | HIS400 |
| A | HOH548 |
| A | HOH551 |
| A | HOH569 |
| A | HOH571 |
| A | HOH575 |
| A | HOH581 |
| A | HOH618 |
| site_id | BC1 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE HEM A 511 |
| Chain | Residue |
| A | TYR57 |
| A | GLN60 |
| A | PHE61 |
| A | TRP64 |
| A | GLY167 |
| A | CYS168 |
| A | CYS171 |
| A | HIS172 |
| A | LEU179 |
| A | HIS203 |
| A | ARG207 |
| A | MET300 |
| A | TYR302 |
| A | TYR310 |
| A | SER311 |
| A | HIS313 |
| A | HOH827 |
| A | HOH839 |
| site_id | BC2 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE HEM A 512 |
| Chain | Residue |
| A | GLY316 |
| A | HOH546 |
| A | HOH547 |
| A | HOH725 |
| A | SER70 |
| A | PRO99 |
| A | ARG100 |
| A | GLY101 |
| A | HIS102 |
| A | TYR104 |
| A | ALA105 |
| A | ASP108 |
| A | CYS133 |
| A | LYS134 |
| A | ILE166 |
| A | CYS211 |
| A | CYS214 |
| A | HIS215 |
| A | HIS299 |
| A | MET300 |
| site_id | BC3 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE HEM A 513 |
| Chain | Residue |
| A | PRO99 |
| A | HIS215 |
| A | TRP280 |
| A | TYR283 |
| A | HIS288 |
| A | SER294 |
| A | CYS295 |
| A | CYS298 |
| A | HIS299 |
| A | ASN317 |
| A | PRO318 |
| A | HIS400 |
| A | GLY401 |
| A | PHE403 |
| A | PHE404 |
| A | HIS405 |
| A | HOH1000 |
| A | HOH1078 |
| A | HOH1087 |
| site_id | BC4 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE HEM A 514 |
| Chain | Residue |
| A | ILE287 |
| A | HIS288 |
| A | PRO318 |
| A | SER325 |
| A | CYS326 |
| A | CYS329 |
| A | HIS330 |
| A | LYS344 |
| A | PHE404 |
| A | GLU408 |
| A | HOH727 |
| A | HOH915 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 9 |
| Details | BINDING: axial binding residue => ECO:0007744|PDB:1FS7, ECO:0007744|PDB:1FS8, ECO:0007744|PDB:1FS9, ECO:0007744|PDB:2E80, ECO:0007744|PDB:2E81, ECO:0007744|PDB:3BNF, ECO:0007744|PDB:3BNG, ECO:0007744|PDB:3BNH, ECO:0007744|PDB:3BNJ |
| Chain | Residue | Details |
| A | HIS102 | |
| A | LYS134 | |
| A | HIS172 | |
| A | HIS215 | |
| A | HIS288 | |
| A | HIS299 | |
| A | HIS313 | |
| A | HIS330 | |
| A | HIS405 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | BINDING: covalent => ECO:0007744|PDB:1FS7, ECO:0007744|PDB:1FS8, ECO:0007744|PDB:1FS9, ECO:0007744|PDB:2E80, ECO:0007744|PDB:2E81, ECO:0007744|PDB:3BNF, ECO:0007744|PDB:3BNG, ECO:0007744|PDB:3BNH, ECO:0007744|PDB:3BNJ |
| Chain | Residue | Details |
| A | CYS130 | |
| A | CYS329 | |
| A | CYS133 | |
| A | CYS168 | |
| A | CYS171 | |
| A | CYS211 | |
| A | CYS214 | |
| A | CYS295 | |
| A | CYS298 | |
| A | CYS326 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | BINDING: BINDING => ECO:0007744|PDB:1FS7, ECO:0007744|PDB:1FS8, ECO:0007744|PDB:1FS9, ECO:0007744|PDB:2E80, ECO:0007744|PDB:2E81, ECO:0007744|PDB:3BNF, ECO:0007744|PDB:3BNG, ECO:0007744|PDB:3BNH, ECO:0007744|PDB:3BNJ |
| Chain | Residue | Details |
| A | GLU217 | |
| A | LYS274 | |
| A | GLN276 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000305, ECO:0007744|PDB:3BNF |
| Chain | Residue | Details |
| A | PHE218 | |
| A | HIS277 |
