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3BNG

W. succinogenes NrfA Y218F

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0009061biological_processanaerobic respiration
A0016491molecular_functionoxidoreductase activity
A0019645biological_processanaerobic electron transport chain
A0020037molecular_functionheme binding
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042128biological_processnitrate assimilation
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 3
ChainResidue
AGLY43
AGLU45
ATYR56
AHOH670
AHOH792
AHOH797
AHOH825

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 4
ChainResidue
ASER243
AHOH882
AALA192
AALA193

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 5
ChainResidue
AASN72
AHOH799
AHOH890
AHOH1149

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A 1
ChainResidue
ATHR285
AGLY286
AILE287
AARG347
AALA406
APRO407
AGLU408
AGLU409
AHOH835
AHOH985
AHOH1141

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 2
ChainResidue
AGLY306
ASER333
AGLU334
AHOH1044
AHOH1049
AHOH1076
AHOH1091

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 508
ChainResidue
AGLU217
APHE218
ALYS274
AGLN276
AHOH601
AHOH715

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE Y1 A 509
ChainResidue
AGLU52
AASP444
AHOH670
AHOH792
AHOH793
AHOH794
AHOH797

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE Y1 A 510
ChainResidue
APRO99
AHOH677
AHOH726
AHOH800
AHOH1078

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE Y1 A 511
ChainResidue
AGLN304
AASP323
AGLU334
AHOH1076

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE Y1 A 512
ChainResidue
AGLU408

site_idBC2
Number of Residues26
DetailsBINDING SITE FOR RESIDUE HEM A 513
ChainResidue
ATYR96
AASN97
APRO99
AASP108
AASN109
ATHR112
AARG114
ATHR115
ALEU126
ACYS130
ACYS133
ALYS134
ACYS214
AHIS215
APHE218
APHE220
AHIS277
AALA398
AHIS400
AHOH547
AHOH550
AHOH569
AHOH571
AHOH575
AHOH617
AHOH1047

site_idBC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEM A 514
ChainResidue
AHOH822
AHOH831
ATYR57
AGLN60
APHE61
ATRP64
AGLY167
ACYS168
ACYS171
AHIS172
ALEU179
AHIS203
AARG207
AMET300
ATYR302
ATYR310
ASER311
AHIS313
AHOH805

site_idBC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEM A 515
ChainResidue
ASER70
APRO99
AARG100
AHIS102
ATYR104
AALA105
AASP108
ACYS133
ALYS134
AILE166
ACYS211
ACYS214
AHIS215
AHIS299
AGLY316
AHOH546
AHOH677
AHOH726
AHOH1149

site_idBC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEM A 516
ChainResidue
APRO99
AHIS215
ATYR283
AHIS288
ASER294
ACYS295
ACYS298
AHIS299
AASN317
APRO318
AHIS400
AGLY401
APHE403
APHE404
AHIS405
AHOH677
AHOH801
AHOH1024
AHOH1078

site_idBC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEM A 517
ChainResidue
AILE287
AHIS288
ALYS291
APRO318
ASER325
ACYS326
ACYS329
AHIS330
AGLU332
AILE340
ALYS344
APHE404
AGLU408
AHOH727
AHOH1048
AHOH1050
AHOH1089

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues9
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"PDB","id":"1FS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E81","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNJ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"description":"covalent","evidences":[{"source":"PDB","id":"1FS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E81","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNJ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PDB","id":"1FS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1FS9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E81","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BNJ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3BNF","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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