3BN1
Crystal structure of GDP-perosamine synthase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000271 | biological_process | polysaccharide biosynthetic process |
| A | 0008483 | molecular_function | transaminase activity |
| A | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| A | 0009243 | biological_process | O antigen biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| A | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
| B | 0000271 | biological_process | polysaccharide biosynthetic process |
| B | 0008483 | molecular_function | transaminase activity |
| B | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| B | 0009243 | biological_process | O antigen biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
| C | 0000271 | biological_process | polysaccharide biosynthetic process |
| C | 0008483 | molecular_function | transaminase activity |
| C | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| C | 0009243 | biological_process | O antigen biosynthetic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0030170 | molecular_function | pyridoxal phosphate binding |
| C | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
| D | 0000271 | biological_process | polysaccharide biosynthetic process |
| D | 0008483 | molecular_function | transaminase activity |
| D | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| D | 0009243 | biological_process | O antigen biosynthetic process |
| D | 0016740 | molecular_function | transferase activity |
| D | 0030170 | molecular_function | pyridoxal phosphate binding |
| D | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT A 372 |
| Chain | Residue |
| A | GLN213 |
| A | ARG231 |
| B | TYR86 |
| B | HOH849 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT C 372 |
| Chain | Residue |
| C | TYR86 |
| C | HOH524 |
| D | GLN213 |
| D | ARG231 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT D 372 |
| Chain | Residue |
| C | ARG231 |
| D | TYR86 |
| D | HOH667 |
| C | GLN213 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 373 |
| Chain | Residue |
| A | GLU294 |
| A | LEU296 |
| A | HOH435 |
| A | HOH455 |
| A | HOH594 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE AKG A 374 |
| Chain | Residue |
| A | TYR86 |
| A | ASN185 |
| A | TRP286 |
| A | ARG315 |
| A | HOH578 |
| B | GLN213 |
| B | ARG231 |
| B | HOH909 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"N6-(pyridoxal phosphate)lysine","evidences":[{"source":"UniProtKB","id":"Q8ZNF3","evidenceCode":"ECO:0000250"},{"source":"PubMed","id":"18795799","evidenceCode":"ECO:0000303"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| A | TYR86 | |
| A | ASP157 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| B | TYR86 | |
| B | ASP157 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| C | TYR86 | |
| C | ASP157 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| D | TYR86 | |
| D | ASP157 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| A | SER32 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| B | SER32 |
| site_id | CSA7 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| C | SER32 |
| site_id | CSA8 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1b9h |
| Chain | Residue | Details |
| D | SER32 |
