3BN1
Crystal structure of GDP-perosamine synthase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000271 | biological_process | polysaccharide biosynthetic process |
A | 0008483 | molecular_function | transaminase activity |
A | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
A | 0009243 | biological_process | O antigen biosynthetic process |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
B | 0000271 | biological_process | polysaccharide biosynthetic process |
B | 0008483 | molecular_function | transaminase activity |
B | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
B | 0009243 | biological_process | O antigen biosynthetic process |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
C | 0000271 | biological_process | polysaccharide biosynthetic process |
C | 0008483 | molecular_function | transaminase activity |
C | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
C | 0009243 | biological_process | O antigen biosynthetic process |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
D | 0000271 | biological_process | polysaccharide biosynthetic process |
D | 0008483 | molecular_function | transaminase activity |
D | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
D | 0009243 | biological_process | O antigen biosynthetic process |
D | 0030170 | molecular_function | pyridoxal phosphate binding |
D | 0102933 | molecular_function | GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT A 372 |
Chain | Residue |
A | GLN213 |
A | ARG231 |
B | TYR86 |
B | HOH849 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT C 372 |
Chain | Residue |
C | TYR86 |
C | HOH524 |
D | GLN213 |
D | ARG231 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ACT D 372 |
Chain | Residue |
C | ARG231 |
D | TYR86 |
D | HOH667 |
C | GLN213 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NA A 373 |
Chain | Residue |
A | GLU294 |
A | LEU296 |
A | HOH435 |
A | HOH455 |
A | HOH594 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE AKG A 374 |
Chain | Residue |
A | TYR86 |
A | ASN185 |
A | TRP286 |
A | ARG315 |
A | HOH578 |
B | GLN213 |
B | ARG231 |
B | HOH909 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250|UniProtKB:Q8ZNF3, ECO:0000303|PubMed:18795799 |
Chain | Residue | Details |
A | LLP186 | |
B | LLP186 | |
C | LLP186 | |
D | LLP186 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
A | TYR86 | |
A | ASP157 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
B | TYR86 | |
B | ASP157 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
C | TYR86 | |
C | ASP157 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
D | TYR86 | |
D | ASP157 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
A | SER32 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
B | SER32 |
site_id | CSA7 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
C | SER32 |
site_id | CSA8 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1b9h |
Chain | Residue | Details |
D | SER32 |