3BIO
Crystal structure of oxidoreductase (Gfo/Idh/MocA family member) from Porphyromonas gingivalis W83
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0009085 | biological_process | lysine biosynthetic process |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0019877 | biological_process | diaminopimelate biosynthetic process |
A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0009085 | biological_process | lysine biosynthetic process |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0019877 | biological_process | diaminopimelate biosynthetic process |
B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACT A 3001 |
Chain | Residue |
A | ASN16 |
A | MSE154 |
site_id | AC2 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE EPE A 1001 |
Chain | Residue |
A | HIS229 |
A | THR259 |
A | HOH5023 |
A | HOH5105 |
A | ASP94 |
A | GLY122 |
A | TRP123 |
A | ASP124 |
A | PHE148 |
A | SER153 |
A | THR173 |
site_id | AC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE EPE B 1001 |
Chain | Residue |
B | ASP94 |
B | GLY122 |
B | TRP123 |
B | ASP124 |
B | PHE148 |
B | MSE152 |
B | SER153 |
B | THR173 |
B | HIS229 |
B | THR259 |
B | HOH1053 |
B | HOH1086 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 5001 |
Chain | Residue |
A | HIS96 |
A | ARG132 |
A | PHE148 |
B | LYS299 |