3BIO
Crystal structure of oxidoreductase (Gfo/Idh/MocA family member) from Porphyromonas gingivalis W83
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0008652 | biological_process | amino acid biosynthetic process |
| A | 0009085 | biological_process | lysine biosynthetic process |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019877 | biological_process | diaminopimelate biosynthetic process |
| A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0008652 | biological_process | amino acid biosynthetic process |
| B | 0009085 | biological_process | lysine biosynthetic process |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019877 | biological_process | diaminopimelate biosynthetic process |
| B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE ACT A 3001 |
| Chain | Residue |
| A | ASN16 |
| A | MSE154 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE EPE A 1001 |
| Chain | Residue |
| A | HIS229 |
| A | THR259 |
| A | HOH5023 |
| A | HOH5105 |
| A | ASP94 |
| A | GLY122 |
| A | TRP123 |
| A | ASP124 |
| A | PHE148 |
| A | SER153 |
| A | THR173 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE EPE B 1001 |
| Chain | Residue |
| B | ASP94 |
| B | GLY122 |
| B | TRP123 |
| B | ASP124 |
| B | PHE148 |
| B | MSE152 |
| B | SER153 |
| B | THR173 |
| B | HIS229 |
| B | THR259 |
| B | HOH1053 |
| B | HOH1086 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 5001 |
| Chain | Residue |
| A | HIS96 |
| A | ARG132 |
| A | PHE148 |
| B | LYS299 |
