3BF5
Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004001 | molecular_function | adenosine kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005525 | molecular_function | GTP binding |
A | 0006167 | biological_process | AMP biosynthetic process |
A | 0008617 | biological_process | guanosine metabolic process |
A | 0008906 | molecular_function | inosine kinase activity |
A | 0009165 | biological_process | nucleotide biosynthetic process |
A | 0009224 | biological_process | CMP biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
A | 0019206 | molecular_function | nucleoside kinase activity |
A | 0043771 | molecular_function | cytidine kinase activity |
A | 0046085 | biological_process | adenosine metabolic process |
A | 0046087 | biological_process | cytidine metabolic process |
A | 0046102 | biological_process | inosine metabolic process |
A | 0106366 | molecular_function | guanosine kinase activity |
A | 1901293 | biological_process | nucleoside phosphate biosynthetic process |
A | 1905108 | molecular_function | guanosine binding |
B | 0004001 | molecular_function | adenosine kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005525 | molecular_function | GTP binding |
B | 0006167 | biological_process | AMP biosynthetic process |
B | 0008617 | biological_process | guanosine metabolic process |
B | 0008906 | molecular_function | inosine kinase activity |
B | 0009165 | biological_process | nucleotide biosynthetic process |
B | 0009224 | biological_process | CMP biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
B | 0019206 | molecular_function | nucleoside kinase activity |
B | 0043771 | molecular_function | cytidine kinase activity |
B | 0046085 | biological_process | adenosine metabolic process |
B | 0046087 | biological_process | cytidine metabolic process |
B | 0046102 | biological_process | inosine metabolic process |
B | 0106366 | molecular_function | guanosine kinase activity |
B | 1901293 | biological_process | nucleoside phosphate biosynthetic process |
B | 1905108 | molecular_function | guanosine binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 B 288 |
Chain | Residue |
A | ARG241 |
A | SER242 |
A | LYS245 |
B | ARG241 |
B | SER242 |
B | LYS245 |
B | HOH358 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PGO A 288 |
Chain | Residue |
A | ALA112 |
A | GLY130 |
A | GLU151 |
A | LYS154 |
A | GLN108 |
A | MSE111 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PGO B 289 |
Chain | Residue |
B | THR64 |
B | SER89 |
B | HOH301 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PGO B 290 |
Chain | Residue |
B | MSE62 |
B | GLU73 |
B | ASP271 |
B | ARG274 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PGO A 289 |
Chain | Residue |
A | GLN150 |
A | ASN173 |
A | HIS175 |
A | GLU176 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PGO B 291 |
Chain | Residue |
B | PRO189 |
B | MSE206 |
B | ASP207 |
B | GLY208 |
B | HOH355 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PGO A 290 |
Chain | Residue |
A | THR196 |
A | GLY198 |
A | GLY201 |
A | PHE229 |
A | HOH295 |
A | HOH406 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PGO B 292 |
Chain | Residue |
B | TYR168 |
B | THR192 |
B | MSE206 |
B | ILE243 |
B | HOH356 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:Q57849 |
Chain | Residue | Details |
A | ASP227 | |
B | ASP227 |
site_id | SWS_FT_FI2 |
Number of Residues | 20 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:Q57849 |
Chain | Residue | Details |
A | ASP13 | |
A | ASP227 | |
B | ASP13 | |
B | ASN28 | |
B | GLY38 | |
B | ASN42 | |
B | GLN102 | |
B | SER104 | |
B | GLN150 | |
B | ASN173 | |
B | THR196 | |
A | ASN28 | |
B | ASP227 | |
A | GLY38 | |
A | ASN42 | |
A | GLN102 | |
A | SER104 | |
A | GLN150 | |
A | ASN173 | |
A | THR196 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Transition state stabilizer => ECO:0000250|UniProtKB:Q57849 |
Chain | Residue | Details |
A | ARG230 | |
B | ARG230 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1rk2 |
Chain | Residue | Details |
A | GLY226 | |
A | GLY224 | |
A | ALA225 | |
A | ASP227 |
site_id | CSA2 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1rk2 |
Chain | Residue | Details |
B | GLY226 | |
B | GLY224 | |
B | ALA225 | |
B | ASP227 |