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3BER

Human DEAD-box RNA-helicase DDX47, conserved domain I in complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 350
ChainResidue
AGLY128
AGLY129
AGLY151
AARG152
AASP155
AHOH457
AHOH517
AHOH568

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AMP A 300
ChainResidue
ATRP44
ALYS46
AGLN51
ATHR70
AGLY71
ASER72
AGLY73
ALYS74
ATHR75
AGLN111
AHOH404
AHOH430
AHOH534
AHOH543
AHOH648
AHOH695
APHE26

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PGE A 400
ChainResidue
AASP155
AASP155
AHIS156
AHIS156
AASN159
AASN159
ATHR160
ATHR160
AHOH580
AHOH580

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGE A 401
ChainResidue
AVAL18
ALEU192
AARG197
AARG199
AARG217
AALA218
AALA219
ALEU220
AHOH521

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VMDEADRiL
ChainResidueDetails
AVAL172-LEU180

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues171
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues28
DetailsMotif: {"description":"Q motif"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsMotif: {"description":"DEAD box"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues7
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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