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3BER

Human DEAD-box RNA-helicase DDX47, conserved domain I in complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 350
ChainResidue
AGLY128
AGLY129
AGLY151
AARG152
AASP155
AHOH457
AHOH517
AHOH568

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AMP A 300
ChainResidue
ATRP44
ALYS46
AGLN51
ATHR70
AGLY71
ASER72
AGLY73
ALYS74
ATHR75
AGLN111
AHOH404
AHOH430
AHOH534
AHOH543
AHOH648
AHOH695
APHE26

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PGE A 400
ChainResidue
AASP155
AASP155
AHIS156
AHIS156
AASN159
AASN159
ATHR160
ATHR160
AHOH580
AHOH580

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGE A 401
ChainResidue
AVAL18
ALEU192
AARG197
AARG199
AARG217
AALA218
AALA219
ALEU220
AHOH521

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VMDEADRiL
ChainResidueDetails
AVAL172-LEU180

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AALA68

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER9

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR149

225158

PDB entries from 2024-09-18

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