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3BBE

M. jannaschii Nep1

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0016740molecular_functiontransferase activity
A0019843molecular_functionrRNA binding
A0032259biological_processmethylation
A0042254biological_processribosome biogenesis
A0042803molecular_functionprotein homodimerization activity
A0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
A0070475biological_processrRNA base methylation
B0003723molecular_functionRNA binding
B0006364biological_processrRNA processing
B0008168molecular_functionmethyltransferase activity
B0016740molecular_functiontransferase activity
B0019843molecular_functionrRNA binding
B0032259biological_processmethylation
B0042254biological_processribosome biogenesis
B0042803molecular_functionprotein homodimerization activity
B0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
B0070475biological_processrRNA base methylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 206
ChainResidue
ATHR142
ALYS143
ATYR186
ALYS188
ALEU190

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 207
ChainResidue
BARG24
BTYR38
AASP128
AHOH218
BLYS22
BILE23

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 208
ChainResidue
ATYR201
ASER202
AHOH320
BPRO150
BSER202

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 209
ChainResidue
ATHR2
AASN4
AASN77
AILE133
AASN134

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 210
ChainResidue
AVAL87
AGLU122
ALYS124
AGLU132
AILE133
AHOH217
AHOH300

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 206
ChainResidue
BTHR142
BLYS143
BTYR186
BLYS188
BGLY189
BLEU190
BVAL195

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 207
ChainResidue
ALYS136
BTYR79
BLYS89
BGLU122
BGLU132
BILE133

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 208
ChainResidue
BTHR2
BASN4
BILE133
BASN134

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsSite: {"description":"Interaction with substrate rRNA"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Stabilizes Arg-54"}
ChainResidueDetails

242500

PDB entries from 2025-10-01

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