3AYM
Crystal structure of the batho intermediate of squid rhodopsin
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004930 | molecular_function | G protein-coupled receptor activity |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0007186 | biological_process | G protein-coupled receptor signaling pathway |
| A | 0007601 | biological_process | visual perception |
| A | 0007602 | biological_process | phototransduction |
| A | 0008020 | molecular_function | G protein-coupled photoreceptor activity |
| A | 0009584 | biological_process | detection of visible light |
| A | 0009881 | molecular_function | photoreceptor activity |
| A | 0016020 | cellular_component | membrane |
| A | 0016918 | molecular_function | retinal binding |
| A | 0033583 | cellular_component | rhabdomere membrane |
| A | 0042995 | cellular_component | cell projection |
| A | 0071482 | biological_process | cellular response to light stimulus |
| B | 0004930 | molecular_function | G protein-coupled receptor activity |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0007186 | biological_process | G protein-coupled receptor signaling pathway |
| B | 0007601 | biological_process | visual perception |
| B | 0007602 | biological_process | phototransduction |
| B | 0008020 | molecular_function | G protein-coupled photoreceptor activity |
| B | 0009584 | biological_process | detection of visible light |
| B | 0009881 | molecular_function | photoreceptor activity |
| B | 0016020 | cellular_component | membrane |
| B | 0016918 | molecular_function | retinal binding |
| B | 0033583 | cellular_component | rhabdomere membrane |
| B | 0042995 | cellular_component | cell projection |
| B | 0071482 | biological_process | cellular response to light stimulus |
Functional Information from PROSITE/UniProt
| site_id | PS00237 |
| Number of Residues | 17 |
| Details | G_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. MSImTMAMISIDRYNvI |
| Chain | Residue | Details |
| A | MET121-ILE137 |
| site_id | PS00238 |
| Number of Residues | 17 |
| Details | OPSIN Visual pigments (opsins) retinal binding site. LPvMfAKASAihNPmiY |
| Chain | Residue | Details |
| A | LEU299-TYR315 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 154 |
| Details | TOPO_DOM: Extracellular => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | GLY2-VAL33 | |
| A | LEU98-LYS109 | |
| A | GLY173-SER199 | |
| A | ALA284-THR293 | |
| B | GLY2-VAL33 | |
| B | LEU98-LYS109 | |
| B | GLY173-SER199 | |
| B | ALA284-THR293 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 48 |
| Details | TRANSMEM: Helical; Name=1 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | TYR34-LEU58 | |
| B | TYR34-LEU58 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 396 |
| Details | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | PHE59-ASN70 | |
| A | ASP132-ARG151 | |
| A | MET225-LYS261 | |
| A | SER316-ALA448 | |
| B | PHE59-ASN70 | |
| B | ASP132-ARG151 | |
| B | MET225-LYS261 | |
| B | SER316-ALA448 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 52 |
| Details | TRANSMEM: Helical; Name=2 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | MET71-PHE97 | |
| B | MET71-PHE97 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 42 |
| Details | TRANSMEM: Helical; Name=3 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | VAL110-ILE131 | |
| B | VAL110-ILE131 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 40 |
| Details | TRANSMEM: Helical; Name=4 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | ALA152-PHE172 | |
| B | ALA152-PHE172 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 48 |
| Details | TRANSMEM: Helical; Name=5 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | ASN200-VAL224 | |
| B | ASN200-VAL224 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 42 |
| Details | TRANSMEM: Helical; Name=6 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | ILE262-LEU283 | |
| B | ILE262-LEU283 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 42 |
| Details | TRANSMEM: Helical; Name=7 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
| Chain | Residue | Details |
| A | PRO294-TYR315 | |
| B | PRO294-TYR315 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-(retinylidene)lysine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518, ECO:0000269|PubMed:3191148, ECO:0007744|PDB:2Z73, ECO:0007744|PDB:4WW3 |
| Chain | Residue | Details |
| A | LYS305 | |
| B | LYS305 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | LIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0007744|PDB:2ZIY |
| Chain | Residue | Details |
| A | CYS336 | |
| B | CYS336 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 2 |
| Details | LIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0007744|PDB:2ZIY |
| Chain | Residue | Details |
| A | CYS337 | |
| B | CYS337 |
| site_id | SWS_FT_FI13 |
| Number of Residues | 2 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:18463093 |
| Chain | Residue | Details |
| A | ASN8 | |
| B | ASN8 |
