3AYM
Crystal structure of the batho intermediate of squid rhodopsin
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004930 | molecular_function | G protein-coupled receptor activity |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0007165 | biological_process | signal transduction |
| A | 0007186 | biological_process | G protein-coupled receptor signaling pathway |
| A | 0007601 | biological_process | visual perception |
| A | 0007602 | biological_process | phototransduction |
| A | 0009881 | molecular_function | photoreceptor activity |
| A | 0016020 | cellular_component | membrane |
| A | 0016918 | molecular_function | retinal binding |
| B | 0004930 | molecular_function | G protein-coupled receptor activity |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0007165 | biological_process | signal transduction |
| B | 0007186 | biological_process | G protein-coupled receptor signaling pathway |
| B | 0007601 | biological_process | visual perception |
| B | 0007602 | biological_process | phototransduction |
| B | 0009881 | molecular_function | photoreceptor activity |
| B | 0016020 | cellular_component | membrane |
| B | 0016918 | molecular_function | retinal binding |
Functional Information from PROSITE/UniProt
| site_id | PS00237 |
| Number of Residues | 17 |
| Details | G_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. MSImTMAMISIDRYNvI |
| Chain | Residue | Details |
| A | MET121-ILE137 |
| site_id | PS00238 |
| Number of Residues | 17 |
| Details | OPSIN Visual pigments (opsins) retinal binding site. LPvMfAKASAihNPmiY |
| Chain | Residue | Details |
| A | LEU299-TYR315 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 48 |
| Details | Transmembrane: {"description":"Helical; Name=1","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 132 |
| Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 52 |
| Details | Transmembrane: {"description":"Helical; Name=2","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 92 |
| Details | Topological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 42 |
| Details | Transmembrane: {"description":"Helical; Name=3","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 40 |
| Details | Transmembrane: {"description":"Helical; Name=4","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 48 |
| Details | Transmembrane: {"description":"Helical; Name=5","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 42 |
| Details | Transmembrane: {"description":"Helical; Name=6","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 42 |
| Details | Transmembrane: {"description":"Helical; Name=7","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 18 |
| Details | Compositional bias: {"description":"Acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-(retinylidene)lysine","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21906602","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26024518","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"3191148","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2Z73","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4WW3","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 2 |
| Details | Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2ZIY","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 2 |
| Details | Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"18463093","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18480818","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2ZIY","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
