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3AVM

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 2
ChainResidue
AHOH28
ATHR66
AHIS67
ALYS111
ALYS136
ALYS159

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 4
ChainResidue
AHOH221
AHOH248
ALYS71
AHIS171
ALEU172

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 6
ChainResidue
AGLY94
ASER123
ATHR124
ATHR125
AHOH251
AHOH253

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 7
ChainResidue
AGLU85
AGLU87
APHE100
ALYS103
BSO48
BARG107

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 213
ChainResidue
AGLU92

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACY A 214
ChainResidue
AHOH8
AASN184
AHIS185
BALA105
BGLY106
BARG107
BTRP108
BPRO109

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACY A 3
ChainResidue
ATYR99
ALYS103
AACY215
AHOH228
BHOH25
BGLU87
BHOH269

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACY A 215
ChainResidue
AACY3
AHOH20
AGLU87
AHOH226
AHOH249
BTYR99
BLYS103

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1
ChainResidue
BTHR66
BHIS67
BLYS111
BLYS136
BLYS159

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 3
ChainResidue
BLYS71
BARG166
BHIS171
BLEU172
BHOH221
BHOH271

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 5
ChainResidue
BGLY94
BSER123
BTHR124
BTHR125
BHOH241
BHOH249
BHOH266

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 8
ChainResidue
ASO47
AARG107
BGLU85
BGLU87
BPHE100
BLYS103

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 213
ChainResidue
BVAL72
BGLU92

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACY B 214
ChainResidue
AARG107
ATRP108
APRO109
BTRP108
BGLY197
BVAL201
BHOH256

site_idBC6
Number of Residues13
DetailsBINDING SITE FOR CHAIN D OF LEDGF PEPTIDE
ChainResidue
AGLN95
ATHR124
AASP139
AHOH270
BASP167
BGLN168
BALA169
BGLU170
BHIS171
BTHR174
BHOH243
BHOH275
DHOH141

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR CHAIN F OF LEDGF PEPTIDE
ChainResidue
AHOH242
BGLN95
BTHR124
BHOH267
FHOH144
AASP167
AGLN168
AALA169
AGLU170
AHIS171
ATHR174
AHOH225

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP64
AASP116
BASP64
BASP116

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P04585
ChainResidueDetails
AGLU152
BGLU152

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PDB entries from 2024-07-24

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