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3AV0

Crystal structure of Mre11-Rad50 bound to ATP S

Functional Information from GO Data
ChainGOidnamespacecontents
A0000403molecular_functionY-form DNA binding
A0003677molecular_functionDNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004527molecular_functionexonuclease activity
A0004529molecular_functionDNA exonuclease activity
A0006281biological_processDNA repair
A0006302biological_processdouble-strand break repair
A0006974biological_processDNA damage response
A0008408molecular_function3'-5' exonuclease activity
A0016787molecular_functionhydrolase activity
A0030145molecular_functionmanganese ion binding
A0042802molecular_functionidentical protein binding
A0045027molecular_functionDNA end binding
A0046872molecular_functionmetal ion binding
B0006302biological_processdouble-strand break repair
B0016887molecular_functionATP hydrolysis activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 500
ChainResidue
ALYS30
ALYS59
AARG62
AHOH701

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IPA A 600
ChainResidue
AASP108
ATYR126
AGLU135
ALYS139

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IPA B 601
ChainResidue
ASO4400
BGLU885
BASP887
AARG211

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 400
ChainResidue
AGLN15
ATYR16
ATYR210
AARG211
BIPA601

site_idAC5
Number of Residues25
DetailsBINDING SITE FOR RESIDUE AGS B 1006
ChainResidue
BLYS14
BSER15
BASN34
BGLY35
BSER36
BGLY37
BLYS38
BSER39
BSER40
BTHR60
BILE62
BTHR63
BLYS64
BGLN134
BTYR890
BLEU910
BASN914
BSER916
BGLY917
BGLY918
BGLU919
BGLU947
BLYS994
BMG1007
BHOH1400

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1007
ChainResidue
BSER39
BGLN134
BAGS1006
BHOH1400
BHOH1401

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 1200
ChainResidue
BGLY135
BTYR951
BTYR951

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1201
ChainResidue
BTHR949
BVAL950
BVAL950
BTYR951
BTYR951
BHIS978
BHIS979

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1202
ChainResidue
BASP59
BLYS64
BGLY65
BLYS66
BHOH1404
BHOH1408

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IPA B 1300
ChainResidue
BGLN134
BGLY917
BGLN920
BTYR951

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"HAMAP-Rule","id":"MF_02044","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_02044","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00449","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"3AUY","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PDB","id":"3AUX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3AUY","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00449","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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