3AUO
DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006259 | biological_process | DNA metabolic process |
| A | 0006260 | biological_process | DNA replication |
| A | 0006281 | biological_process | DNA repair |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0042578 | molecular_function | phosphoric ester hydrolase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0071897 | biological_process | DNA biosynthetic process |
| A | 0140078 | molecular_function | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006259 | biological_process | DNA metabolic process |
| B | 0006260 | biological_process | DNA replication |
| B | 0006281 | biological_process | DNA repair |
| B | 0006974 | biological_process | DNA damage response |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0042578 | molecular_function | phosphoric ester hydrolase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0071897 | biological_process | DNA biosynthetic process |
| B | 0140078 | molecular_function | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE DG3 A 576 |
| Chain | Residue |
| A | ARG35 |
| A | TYR258 |
| A | LEU259 |
| A | GLY261 |
| A | LYS263 |
| A | ARG270 |
| A | MG577 |
| A | MG578 |
| A | HOH581 |
| D | DC13 |
| D | DDG29 |
| A | ARG157 |
| A | GLY187 |
| A | SER188 |
| A | ARG191 |
| A | VAL196 |
| A | GLY197 |
| A | ASP198 |
| A | ASP200 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG A 577 |
| Chain | Residue |
| A | SER188 |
| A | ASP198 |
| A | ASP200 |
| A | DG3576 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 578 |
| Chain | Residue |
| A | ASP198 |
| A | ASP200 |
| A | ASP243 |
| A | DG3576 |
| D | DDG29 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ZN A 579 |
| Chain | Residue |
| A | GLU413 |
| A | HIS440 |
| A | HIS468 |
| site_id | AC5 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE DG3 B 576 |
| Chain | Residue |
| B | ARG35 |
| B | ARG157 |
| B | GLY187 |
| B | SER188 |
| B | ARG191 |
| B | VAL196 |
| B | GLY197 |
| B | ASP198 |
| B | ASP200 |
| B | TYR258 |
| B | LEU259 |
| B | LYS263 |
| B | ARG270 |
| B | MG577 |
| B | MG578 |
| B | HOH590 |
| E | DC13 |
| E | DDG29 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 577 |
| Chain | Residue |
| B | SER188 |
| B | ASP198 |
| B | ASP200 |
| B | DG3576 |
| B | HOH619 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 578 |
| Chain | Residue |
| B | ASP198 |
| B | ASP200 |
| B | ASP243 |
| B | DG3576 |
| E | DDG29 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 579 |
| Chain | Residue |
| B | GLU413 |
| B | HIS440 |
| B | HIS468 |
| B | HOH580 |
