3AUO
DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006259 | biological_process | DNA metabolic process |
A | 0006281 | biological_process | DNA repair |
A | 0008270 | molecular_function | zinc ion binding |
A | 0042578 | molecular_function | phosphoric ester hydrolase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0071897 | biological_process | DNA biosynthetic process |
A | 0071978 | biological_process | bacterial-type flagellum-dependent swarming motility |
B | 0003677 | molecular_function | DNA binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006259 | biological_process | DNA metabolic process |
B | 0006281 | biological_process | DNA repair |
B | 0008270 | molecular_function | zinc ion binding |
B | 0042578 | molecular_function | phosphoric ester hydrolase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0071897 | biological_process | DNA biosynthetic process |
B | 0071978 | biological_process | bacterial-type flagellum-dependent swarming motility |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE DG3 A 576 |
Chain | Residue |
A | ARG35 |
A | TYR258 |
A | LEU259 |
A | GLY261 |
A | LYS263 |
A | ARG270 |
A | MG577 |
A | MG578 |
A | HOH581 |
D | DC13 |
D | DDG29 |
A | ARG157 |
A | GLY187 |
A | SER188 |
A | ARG191 |
A | VAL196 |
A | GLY197 |
A | ASP198 |
A | ASP200 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG A 577 |
Chain | Residue |
A | SER188 |
A | ASP198 |
A | ASP200 |
A | DG3576 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 578 |
Chain | Residue |
A | ASP198 |
A | ASP200 |
A | ASP243 |
A | DG3576 |
D | DDG29 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN A 579 |
Chain | Residue |
A | GLU413 |
A | HIS440 |
A | HIS468 |
site_id | AC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE DG3 B 576 |
Chain | Residue |
B | ARG35 |
B | ARG157 |
B | GLY187 |
B | SER188 |
B | ARG191 |
B | VAL196 |
B | GLY197 |
B | ASP198 |
B | ASP200 |
B | TYR258 |
B | LEU259 |
B | LYS263 |
B | ARG270 |
B | MG577 |
B | MG578 |
B | HOH590 |
E | DC13 |
E | DDG29 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 577 |
Chain | Residue |
B | SER188 |
B | ASP198 |
B | ASP200 |
B | DG3576 |
B | HOH619 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 578 |
Chain | Residue |
B | ASP198 |
B | ASP200 |
B | ASP243 |
B | DG3576 |
E | DDG29 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 579 |
Chain | Residue |
B | GLU413 |
B | HIS440 |
B | HIS468 |
B | HOH580 |