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3AKK

Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0001819biological_processpositive regulation of cytokine production
A0004674molecular_functionprotein serine/threonine kinase activity
A0005524molecular_functionATP binding
A0005576cellular_componentextracellular region
A0030430cellular_componenthost cell cytoplasm
A0033138biological_processpositive regulation of peptidyl-serine phosphorylation
A0042025cellular_componenthost cell nucleus
A0044164cellular_componenthost cell cytosol
A0046872molecular_functionmetal ion binding
A0051092biological_processpositive regulation of NF-kappaB transcription factor activity
A0106310molecular_functionprotein serine kinase activity
A1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0001819biological_processpositive regulation of cytokine production
B0004674molecular_functionprotein serine/threonine kinase activity
B0005524molecular_functionATP binding
B0005576cellular_componentextracellular region
B0030430cellular_componenthost cell cytoplasm
B0033138biological_processpositive regulation of peptidyl-serine phosphorylation
B0042025cellular_componenthost cell nucleus
B0044164cellular_componenthost cell cytosol
B0046872molecular_functionmetal ion binding
B0051092biological_processpositive regulation of NF-kappaB transcription factor activity
B0106310molecular_functionprotein serine kinase activity
B1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0001819biological_processpositive regulation of cytokine production
C0004674molecular_functionprotein serine/threonine kinase activity
C0005524molecular_functionATP binding
C0005576cellular_componentextracellular region
C0030430cellular_componenthost cell cytoplasm
C0033138biological_processpositive regulation of peptidyl-serine phosphorylation
C0042025cellular_componenthost cell nucleus
C0044164cellular_componenthost cell cytosol
C0046872molecular_functionmetal ion binding
C0051092biological_processpositive regulation of NF-kappaB transcription factor activity
C0106310molecular_functionprotein serine kinase activity
C1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
D0000166molecular_functionnucleotide binding
D0000287molecular_functionmagnesium ion binding
D0001819biological_processpositive regulation of cytokine production
D0004674molecular_functionprotein serine/threonine kinase activity
D0005524molecular_functionATP binding
D0005576cellular_componentextracellular region
D0030430cellular_componenthost cell cytoplasm
D0033138biological_processpositive regulation of peptidyl-serine phosphorylation
D0042025cellular_componenthost cell nucleus
D0044164cellular_componenthost cell cytosol
D0046872molecular_functionmetal ion binding
D0051092biological_processpositive regulation of NF-kappaB transcription factor activity
D0106310molecular_functionprotein serine kinase activity
D1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 400
ChainResidue
AASN160
AASP179
AHOH330
AHOH334
AADP500

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP A 500
ChainResidue
AMET35
ALYS37
AGLN72
ALYS88
AASP89
APHE90
ATHR91
ALEU97
AASP179
AHOH330
AHOH341
AHOH344
AHOH353
AHOH367
AHOH376
AHOH377
AMG400
AGLY18
AGLY19
AASN21
ALYS24

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 400
ChainResidue
BASN160
BASP179
BHOH327
BADP500

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ADP B 500
ChainResidue
BPHE17
BGLY18
BGLY19
BASN21
BLYS24
BMET35
BLYS37
BGLN72
BLYS88
BASP89
BPHE90
BLEU97
BPHE178
BASP179
BHOH327
BHOH332
BMG400
BHOH415

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 400
ChainResidue
CASN160
CASP179
CHOH331
CHOH341
CADP500

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP C 500
ChainResidue
CPHE17
CGLY18
CASN21
CLYS24
CMET35
CLYS37
CGLN72
CCYS87
CLYS88
CASP89
CPHE90
CLEU97
CASP179
CHOH331
CHOH332
CHOH333
CHOH341
CHOH351
CHOH385
CMG400

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG D 400
ChainResidue
DASN160
DASP179
DADP500

site_idAC8
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP D 500
ChainResidue
DGLY18
DGLY19
DALA20
DASN21
DLYS24
DMET35
DLYS37
DGLN72
DCYS87
DLYS88
DASP89
DPHE90
DLEU97
DPHE178
DASP179
DHOH328
DHOH330
DHOH333
DHOH342
DMG400

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING:
ChainResidueDetails
AASN21
BLYS88
BASN160
BASP179
CASN21
CLYS37
CGLN72
CLYS88
CASN160
CASP179
DASN21
ALYS37
DLYS37
DGLN72
DLYS88
DASN160
DASP179
AGLN72
ALYS88
AASN160
AASP179
BASN21
BLYS37
BGLN72

222415

PDB entries from 2024-07-10

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