Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ACA

Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese

Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 3
ChainResidue
A8DD2
AMN4
AALA96
AGLU116
AHOH387
AHOH388

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 4
ChainResidue
AGLU116
AHOH326
AHOH340
A8DD2
AMN3
AGLU112

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN A 5
ChainResidue
A8DD2
AGLU112
AHOH307

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 8DD A 2
ChainResidue
AMN3
AMN4
AMN5
ATRP28
AARG51
AARG84
AALA96
AGLY97
ALEU98
AGLU112
AHOH340
AHOH407
BTRP46
BGLU47

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 1
ChainResidue
BMN2
BALA96
BGLU116
B8DD209
BHOH518
BHOH519

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MN B 2
ChainResidue
BMN1
BALA96
BGLU112
BGLU116
BGLU166
B8DD209
BHOH452
BHOH491

site_idAC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 8DD B 209
ChainResidue
ATHR45
ATRP46
AGLU47
BMN1
BMN2
BTRP28
BARG51
BARG84
BALA96
BLEU98
BGLU166
BHOH491

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GliddgEtpeaAAlRELeEEtG
ChainResidueDetails
AGLY97-GLY118

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: in other chain => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
ChainResidueDetails
ATRP28
AARG84
BTRP28
BARG84

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
ChainResidueDetails
ATRP46
BGLU112
BGLU116
BGLU166
AARG51
AALA96
AGLU112
AGLU116
AGLU166
BTRP46
BARG51
BALA96

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: in other chain => ECO:0000269|PubMed:17052728
ChainResidueDetails
ALEU98
AASP133
BLEU98
BASP133

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:27257257
ChainResidueDetails
ATHR45
BTHR45

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:15592455
ChainResidueDetails
ATYR74
BTYR74

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS42
BLYS42

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon