2ZJS

Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment

Functional Information from GO Data

Chain	GOid	namespace	contents
E	0005886	cellular_component	plasma membrane
E	0006605	biological_process	protein targeting
E	0006886	biological_process	intracellular protein transport
E	0008320	molecular_function	protein transmembrane transporter activity
E	0009306	biological_process	protein secretion
E	0015031	biological_process	protein transport
E	0016020	cellular_component	membrane
E	0043952	biological_process	protein transport by the Sec complex
E	0065002	biological_process	intracellular protein transmembrane transport
L	0002250	biological_process	adaptive immune response
L	0002376	biological_process	immune system process
L	0005515	molecular_function	protein binding
L	0005576	cellular_component	extracellular region
L	0005886	cellular_component	plasma membrane
L	0006955	biological_process	immune response
L	0019814	cellular_component	immunoglobulin complex
L	0030183	biological_process	B cell differentiation
L	0042105	cellular_component	alpha-beta T cell receptor complex
L	0071735	cellular_component	IgG immunoglobulin complex
Y	0005886	cellular_component	plasma membrane
Y	0006605	biological_process	protein targeting
Y	0015031	biological_process	protein transport
Y	0016020	cellular_component	membrane
Y	0043952	biological_process	protein transport by the Sec complex
Y	0065002	biological_process	intracellular protein transmembrane transport

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN L 223

Chain	Residue
H	HIS43
L	GLU185
L	HIS189

---

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN Y 435

Chain	Residue
Y	GLU138
Y	ASP293

---

Functional Information from PROSITE/UniProt

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH

Chain	Residue	Details
L	TYR192-HIS198

---

site_id	PS00430
Number of Residues	27
Details	TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mvkafwsalqipelrqrvl................................................................................................FTLLVLAA

Chain	Residue	Details
Y	MET1-ALA27

---

site_id	PS00756
Number of Residues	18
Details	SECY_2 Protein secY signature 2. WMaErITey.GIGNGtSLI

Chain	Residue	Details
Y	TRP170-ILE187

---

site_id	PS01067
Number of Residues	29
Details	SECE_SEC61G Protein secE/sec61-gamma signature. YfQEaRaeLaRvtWPtreQvvegtQAILL

Chain	Residue	Details
E	TYR8-LEU36

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	97
Details	Topological domain: {"description":"Cytoplasmic"}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	15
Details	Transmembrane: {"description":"Helical; Name=1"}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	75
Details	Topological domain: {"description":"Periplasmic"}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	30
Details	Transmembrane: {"description":"Discontinuously helical; Name=2"}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	10
Details	Intramembrane: {"description":"Helical; Name=Helix 2A"}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	3
Details	Intramembrane: {}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	15
Details	Intramembrane: {"description":"Helical; Name=Helix 2B"}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	15
Details	Transmembrane: {"description":"Helical; Name=3"}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	17
Details	Transmembrane: {"description":"Helical; Name=4"}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	16
Details	Transmembrane: {"description":"Helical; Name=6"}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	16
Details	Transmembrane: {"description":"Helical; Name=7"}

Chain

Residue

Details

---

site_id	SWS_FT_FI13
Number of Residues	19
Details	Transmembrane: {"description":"Helical; Name=8"}

Chain

Residue

Details

---

site_id	SWS_FT_FI14
Number of Residues	16
Details	Transmembrane: {"description":"Helical; Name=9"}

Chain

Residue

Details

---

site_id	SWS_FT_FI15
Number of Residues	15
Details	Transmembrane: {"description":"Helical; Name=10"}

Chain

Residue

Details

---

site_id	SWS_FT_FI16
Number of Residues	20
Details	Transmembrane: {"description":"Helical"}

Chain

Residue

Details

---