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2Z9W

Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxal

Functional Information from GO Data
ChainGOidnamespacecontents
A0008483molecular_functiontransaminase activity
A0030170molecular_functionpyridoxal phosphate binding
A0047300molecular_functionpyridoxamine-pyruvate transaminase activity
B0008483molecular_functiontransaminase activity
B0030170molecular_functionpyridoxal phosphate binding
B0047300molecular_functionpyridoxamine-pyruvate transaminase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1601
ChainResidue
AGLY17
ATYR95
AARG336
AARG345
AHOH1611
AHOH1940
AHOH1952
BGOL957
BHOH2653

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1603
ChainResidue
ALYS219
AARG226
AHOH1636
AHOH1810
AHOH1868

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1605
ChainResidue
APRO23
AGLU24
AARG27
AARG31
ATHR32
AHOH1883
AHOH1987

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 2601
ChainResidue
AGOL958
AHOH1622
AHOH1730
BGLY17
BTYR95
BARG336
BARG345
BHOH2629
BHOH2873
BHOH2919

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2602
ChainResidue
BPRO5
BGLU6
BHIS7

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 2604
ChainResidue
BARG310
BPRO312
BASP313
BARG374
BHOH2674
BHOH2714
BHOH2827
BHOH2960

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 2605
ChainResidue
AASP9
BPRO23
BGLU24
BARG27
BARG31
BTHR32
BHOH2918
BHOH2954

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PXL A 1197
ChainResidue
AGLU68
APRO69
ATYR95
AHIS144
ATHR146
AASP171
AVAL173
ASER174
AASN196
ALYS197

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PXL B 1197
ChainResidue
BGLU68
BPRO69
BTYR95
BHIS144
BTHR146
BASP171
BVAL173
BSER174
BASN196
BLYS197

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 953
ChainResidue
ASER298
AASP299
ASER300

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 954
ChainResidue
BSER298
BASP299
BSER300

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 955
ChainResidue
AGLY98
ATRP102
AHOH1657

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 956
ChainResidue
BGLY98
BTYR101
BTRP102
BHOH2767

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 957
ChainResidue
AARG336
ASO41601
BASP36
BTYR37
BPHE245
BTHR248
BHOH2916
BHOH2965

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 958
ChainResidue
AASP36
ATYR37
APHE245
ATHR248
AHOH1652
AHOH1918
BARG336
BSO42601

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 960
ChainResidue
AHOH1958
BILE12
BTHR13
BASN20
BPRO351
BTYR357

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:17989071
ChainResidueDetails
AGLU68
ATYR95
ATHR146
AARG345
BGLU68
BTYR95
BTHR146
BARG345

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:17989071
ChainResidueDetails
ALYS197
BLYS197

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1b8g
ChainResidueDetails
ATYR95
AASP171
ALYS217

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1b8g
ChainResidueDetails
BTYR95
BASP171
BLYS217

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1b8g
ChainResidueDetails
ATYR95
ALYS197
AASP171

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1b8g
ChainResidueDetails
BTYR95
BLYS197
BASP171

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PDB entries from 2024-07-17

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