2Z8S
Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005576 | cellular_component | extracellular region |
| A | 0016829 | molecular_function | lyase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0071555 | biological_process | cell wall organization |
| A | 0102210 | molecular_function | rhamnogalacturonan endolyase activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0016829 | molecular_function | lyase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0071555 | biological_process | cell wall organization |
| B | 0102210 | molecular_function | rhamnogalacturonan endolyase activity |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 14 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2ZUX |
| Chain | Residue | Details |
| A | ASN152 | |
| B | ASP187 | |
| B | LYS207 | |
| B | GLY238 | |
| B | ARG255 | |
| B | ASN532 | |
| A | ASP172 | |
| A | ASP187 | |
| A | LYS207 | |
| A | GLY238 | |
| A | ARG255 | |
| A | ASN532 | |
| B | ASN152 | |
| B | ASP172 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 86 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:17947240, ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2Z8R, ECO:0007744|PDB:2Z8S, ECO:0007744|PDB:2ZUX |
| Chain | Residue | Details |
| A | ASP153 | |
| A | LYS228 | |
| A | GLU230 | |
| A | HIS363 | |
| A | ASP369 | |
| A | ASP371 | |
| A | ASP373 | |
| A | LYS375 | |
| A | GLU377 | |
| A | ASP386 | |
| A | HIS387 | |
| A | ASP158 | |
| A | HIS399 | |
| A | ASP401 | |
| A | ASP407 | |
| A | ASP409 | |
| A | ARG412 | |
| A | GLY414 | |
| A | GLU416 | |
| A | GLU422 | |
| A | ASP459 | |
| A | TYR462 | |
| A | ASP160 | |
| A | GLY464 | |
| A | GLU466 | |
| A | ASP496 | |
| A | ASP498 | |
| A | LEU500 | |
| A | GLU502 | |
| A | ASP543 | |
| A | LEU545 | |
| A | ASP547 | |
| A | ARG549 | |
| A | ASP162 | |
| A | GLU551 | |
| A | ASN592 | |
| A | ALA594 | |
| A | ASN596 | |
| B | ASP153 | |
| B | ASP158 | |
| B | ASP160 | |
| B | ASP162 | |
| B | GLN164 | |
| B | GLU166 | |
| A | GLN164 | |
| B | ASP222 | |
| B | ASP224 | |
| B | ASP226 | |
| B | LYS228 | |
| B | GLU230 | |
| B | HIS363 | |
| B | ASP369 | |
| B | ASP371 | |
| B | ASP373 | |
| B | LYS375 | |
| A | GLU166 | |
| B | GLU377 | |
| B | ASP386 | |
| B | HIS387 | |
| B | HIS399 | |
| B | ASP401 | |
| B | ASP407 | |
| B | ASP409 | |
| B | ARG412 | |
| B | GLY414 | |
| B | GLU416 | |
| A | ASP222 | |
| B | GLU422 | |
| B | ASP459 | |
| B | TYR462 | |
| B | GLY464 | |
| B | GLU466 | |
| B | ASP496 | |
| B | ASP498 | |
| B | LEU500 | |
| B | GLU502 | |
| B | ASP543 | |
| A | ASP224 | |
| B | LEU545 | |
| B | ASP547 | |
| B | ARG549 | |
| B | GLU551 | |
| B | ASN592 | |
| B | ALA594 | |
| B | ASN596 | |
| A | ASP226 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:17947240, ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2Z8S, ECO:0007744|PDB:2ZUX |
| Chain | Residue | Details |
| A | ARG452 | |
| A | ASP457 | |
| A | TYR595 | |
| B | ARG452 | |
| B | ASP457 | |
| B | TYR595 |
