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2Z8R

Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
A0102210molecular_functionrhamnogalacturonan endolyase activity
B0005576cellular_componentextracellular region
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
B0102210molecular_functionrhamnogalacturonan endolyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 640
ChainResidue
AASP158
AASP160
AASP162
AGLN164
AGLU166
AHOH988

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 641
ChainResidue
AARG549
AGLU551
AHOH720
AASP543
ALEU545
AASP547

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 642
ChainResidue
AHIS363
AHIS399
AASP401
AGLU422
AHOH1086
AHOH1087

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 643
ChainResidue
AASP457
AASP459
ATYR462
AGLY464
AGLU466
AHOH777

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 644
ChainResidue
AASP496
AASP498
ALEU500
AGLU502
AHOH774

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 645
ChainResidue
AASP407
AASP409
AARG412
AGLY414
AGLU416
AHOH772

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 646
ChainResidue
AASP222
AASP224
AASP226
ALYS228
AGLU230

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 647
ChainResidue
AASP153
AASN592
AALA594
AASN596
AHOH650
AHOH742

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 648
ChainResidue
AASP371
AASP373
AGLU377
AASP386
AHIS387
ACA649
AHOH846

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 649
ChainResidue
AASP369
AASP371
AASP373
ALYS375
AGLU377
ACA648

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 640
ChainResidue
BASP153
BASN592
BALA594
BASN596
BHOH681
BHOH702

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 641
ChainResidue
BASP407
BASP409
BARG412
BGLY414
BGLU416
BHOH735

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 642
ChainResidue
BHIS363
BHIS399
BASP401
BGLU422
BHOH1071
BHOH1072

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 643
ChainResidue
BASP543
BLEU545
BASP547
BARG549
BGLU551
BHOH763

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 644
ChainResidue
BASP457
BASP459
BTYR462
BGLY464
BGLU466
BHOH701

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 645
ChainResidue
BASP496
BASP498
BLEU500
BGLU502
BHOH780

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 646
ChainResidue
BHOH978
BASP222
BASP224
BASP226
BLYS228
BGLU230

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 647
ChainResidue
BASP158
BASP160
BASP162
BGLN164
BGLU166
BHOH847

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 648
ChainResidue
BASP371
BASP373
BGLU377
BASP386
BHIS387
BCA649
BHOH857

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 649
ChainResidue
BASP369
BASP371
BASP373
BLYS375
BGLU377
BCA648

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 630
ChainResidue
ASER122
ATRP124
AHIS129
AGLN164
AHOH1036
AHOH1090

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 631
ChainResidue
AASN204
ALYS207
AGLY238
AHOH740
BPRO463

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 632
ChainResidue
ASER180
AASN300
AARG301
AARG304
ATYR326
AHOH968

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MPD A 633
ChainResidue
AGLU257
AHOH848
AHOH894

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 634
ChainResidue
ALYS477
AVAL479
AHOH1058
BGLY242
BTHR243
BGLY244

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 635
ChainResidue
AASP369
AVAL370
AASP407
AGLY414

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD B 630
ChainResidue
BASN300
BARG301
BARG304
BTYR326
BHOH917

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD B 631
ChainResidue
BTRP124
BGLN164
BHOH840
BHOH1008

site_idDC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MPD B 632
ChainResidue
AASP388
ALYS390
BGLY248
BTYR267
BALA282
BASN283
BHOH911
BHOH1034
BHOH1085

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD B 633
ChainResidue
AHOH1033
BASN204
BLYS207
BGLY238
BHOH699

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2ZUX
ChainResidueDetails
AASN152
BASP187
BLYS207
BGLY238
BARG255
BASN532
AASP172
AASP187
ALYS207
AGLY238
AARG255
AASN532
BASN152
BASP172

site_idSWS_FT_FI2
Number of Residues86
DetailsBINDING: BINDING => ECO:0000269|PubMed:17947240, ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2Z8R, ECO:0007744|PDB:2Z8S, ECO:0007744|PDB:2ZUX
ChainResidueDetails
AASP153
ALYS228
AGLU230
AHIS363
AASP369
AASP371
AASP373
ALYS375
AGLU377
AASP386
AHIS387
AASP158
AHIS399
AASP401
AASP407
AASP409
AARG412
AGLY414
AGLU416
AGLU422
AASP459
ATYR462
AASP160
AGLY464
AGLU466
AASP496
AASP498
ALEU500
AGLU502
AASP543
ALEU545
AASP547
AARG549
AASP162
AGLU551
AASN592
AALA594
AASN596
BASP153
BASP158
BASP160
BASP162
BGLN164
BGLU166
AGLN164
BASP222
BASP224
BASP226
BLYS228
BGLU230
BHIS363
BASP369
BASP371
BASP373
BLYS375
AGLU166
BGLU377
BASP386
BHIS387
BHIS399
BASP401
BASP407
BASP409
BARG412
BGLY414
BGLU416
AASP222
BGLU422
BASP459
BTYR462
BGLY464
BGLU466
BASP496
BASP498
BLEU500
BGLU502
BASP543
AASP224
BLEU545
BASP547
BARG549
BGLU551
BASN592
BALA594
BASN596
AASP226

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:17947240, ECO:0000269|PubMed:19193638, ECO:0007744|PDB:2Z8S, ECO:0007744|PDB:2ZUX
ChainResidueDetails
AARG452
AASP457
ATYR595
BARG452
BASP457
BTYR595

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PDB entries from 2024-07-10

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