2Z8R
Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005576 | cellular_component | extracellular region |
| A | 0016829 | molecular_function | lyase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0071555 | biological_process | cell wall organization |
| A | 0102210 | molecular_function | rhamnogalacturonan endolyase activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0016829 | molecular_function | lyase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0071555 | biological_process | cell wall organization |
| B | 0102210 | molecular_function | rhamnogalacturonan endolyase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 640 |
| Chain | Residue |
| A | ASP158 |
| A | ASP160 |
| A | ASP162 |
| A | GLN164 |
| A | GLU166 |
| A | HOH988 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 641 |
| Chain | Residue |
| A | ARG549 |
| A | GLU551 |
| A | HOH720 |
| A | ASP543 |
| A | LEU545 |
| A | ASP547 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 642 |
| Chain | Residue |
| A | HIS363 |
| A | HIS399 |
| A | ASP401 |
| A | GLU422 |
| A | HOH1086 |
| A | HOH1087 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 643 |
| Chain | Residue |
| A | ASP457 |
| A | ASP459 |
| A | TYR462 |
| A | GLY464 |
| A | GLU466 |
| A | HOH777 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA A 644 |
| Chain | Residue |
| A | ASP496 |
| A | ASP498 |
| A | LEU500 |
| A | GLU502 |
| A | HOH774 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 645 |
| Chain | Residue |
| A | ASP407 |
| A | ASP409 |
| A | ARG412 |
| A | GLY414 |
| A | GLU416 |
| A | HOH772 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA A 646 |
| Chain | Residue |
| A | ASP222 |
| A | ASP224 |
| A | ASP226 |
| A | LYS228 |
| A | GLU230 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 647 |
| Chain | Residue |
| A | ASP153 |
| A | ASN592 |
| A | ALA594 |
| A | ASN596 |
| A | HOH650 |
| A | HOH742 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CA A 648 |
| Chain | Residue |
| A | ASP371 |
| A | ASP373 |
| A | GLU377 |
| A | ASP386 |
| A | HIS387 |
| A | CA649 |
| A | HOH846 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 649 |
| Chain | Residue |
| A | ASP369 |
| A | ASP371 |
| A | ASP373 |
| A | LYS375 |
| A | GLU377 |
| A | CA648 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 640 |
| Chain | Residue |
| B | ASP153 |
| B | ASN592 |
| B | ALA594 |
| B | ASN596 |
| B | HOH681 |
| B | HOH702 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 641 |
| Chain | Residue |
| B | ASP407 |
| B | ASP409 |
| B | ARG412 |
| B | GLY414 |
| B | GLU416 |
| B | HOH735 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 642 |
| Chain | Residue |
| B | HIS363 |
| B | HIS399 |
| B | ASP401 |
| B | GLU422 |
| B | HOH1071 |
| B | HOH1072 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 643 |
| Chain | Residue |
| B | ASP543 |
| B | LEU545 |
| B | ASP547 |
| B | ARG549 |
| B | GLU551 |
| B | HOH763 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 644 |
| Chain | Residue |
| B | ASP457 |
| B | ASP459 |
| B | TYR462 |
| B | GLY464 |
| B | GLU466 |
| B | HOH701 |
| site_id | BC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA B 645 |
| Chain | Residue |
| B | ASP496 |
| B | ASP498 |
| B | LEU500 |
| B | GLU502 |
| B | HOH780 |
| site_id | BC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 646 |
| Chain | Residue |
| B | HOH978 |
| B | ASP222 |
| B | ASP224 |
| B | ASP226 |
| B | LYS228 |
| B | GLU230 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 647 |
| Chain | Residue |
| B | ASP158 |
| B | ASP160 |
| B | ASP162 |
| B | GLN164 |
| B | GLU166 |
| B | HOH847 |
| site_id | CC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CA B 648 |
| Chain | Residue |
| B | ASP371 |
| B | ASP373 |
| B | GLU377 |
| B | ASP386 |
| B | HIS387 |
| B | CA649 |
| B | HOH857 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 649 |
| Chain | Residue |
| B | ASP369 |
| B | ASP371 |
| B | ASP373 |
| B | LYS375 |
| B | GLU377 |
| B | CA648 |
| site_id | CC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD A 630 |
| Chain | Residue |
| A | SER122 |
| A | TRP124 |
| A | HIS129 |
| A | GLN164 |
| A | HOH1036 |
| A | HOH1090 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD A 631 |
| Chain | Residue |
| A | ASN204 |
| A | LYS207 |
| A | GLY238 |
| A | HOH740 |
| B | PRO463 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD A 632 |
| Chain | Residue |
| A | SER180 |
| A | ASN300 |
| A | ARG301 |
| A | ARG304 |
| A | TYR326 |
| A | HOH968 |
| site_id | CC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MPD A 633 |
| Chain | Residue |
| A | GLU257 |
| A | HOH848 |
| A | HOH894 |
| site_id | CC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD A 634 |
| Chain | Residue |
| A | LYS477 |
| A | VAL479 |
| A | HOH1058 |
| B | GLY242 |
| B | THR243 |
| B | GLY244 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD A 635 |
| Chain | Residue |
| A | ASP369 |
| A | VAL370 |
| A | ASP407 |
| A | GLY414 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD B 630 |
| Chain | Residue |
| B | ASN300 |
| B | ARG301 |
| B | ARG304 |
| B | TYR326 |
| B | HOH917 |
| site_id | DC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD B 631 |
| Chain | Residue |
| B | TRP124 |
| B | GLN164 |
| B | HOH840 |
| B | HOH1008 |
| site_id | DC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE MPD B 632 |
| Chain | Residue |
| A | ASP388 |
| A | LYS390 |
| B | GLY248 |
| B | TYR267 |
| B | ALA282 |
| B | ASN283 |
| B | HOH911 |
| B | HOH1034 |
| B | HOH1085 |
| site_id | DC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD B 633 |
| Chain | Residue |
| A | HOH1033 |
| B | ASN204 |
| B | LYS207 |
| B | GLY238 |
| B | HOH699 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 38 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"19193638","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2ZUX","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 86 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17947240","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19193638","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2Z8R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2Z8S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZUX","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17947240","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19193638","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2Z8S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZUX","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
