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2YZM

Structure of D-Alanine:D-Alanine Ligase with substrate from Thermus thermophilus HB8

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0003824molecular_functioncatalytic activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
C0003824molecular_functioncatalytic activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008360biological_processregulation of cell shape
C0008716molecular_functionD-alanine-D-alanine ligase activity
C0009252biological_processpeptidoglycan biosynthetic process
C0016874molecular_functionligase activity
C0046872molecular_functionmetal ion binding
C0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DAL A 401
ChainResidue
AGLU13
AHIS82
AGLY83
AGLU87
ATHR157
AASN284
AHOH428
AHOH476

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DAL B 402
ChainResidue
BGLY83
BGLU87
BMET114
BGLY158
BGLU282
BASN284
BHOH453
BGLU13

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DAL C 403
ChainResidue
CGLU13
CHIS82
CGLY83
CGLU87
CGLY158
CGLU282
CASN284

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGrfGEDGtVQG
ChainResidueDetails
AHIS82-GLY93

site_idPS00844
Number of Residues28
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgvrGmARVDFFlaegely.....LnELNTiPG
ChainResidueDetails
ALEU261-GLY288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00047
ChainResidueDetails
AASP147
CASP270
CGLU282
CASN284
AASP270
AGLU282
AASN284
BASP147
BASP270
BGLU282
BASN284
CASP147

Catalytic Information from CSA
site_idCSA1
Number of Residues5
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
AGLU13
ATYR229
AARG268
AGLY288
ASER159

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
BGLU13
BARG268
BGLY288
BSER159

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
CGLU13
CARG268
CGLY288
CSER159

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PDB entries from 2024-11-06

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