2YVL
Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008033 | biological_process | tRNA processing |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0030488 | biological_process | tRNA methylation |
A | 0031515 | cellular_component | tRNA (m1A) methyltransferase complex |
A | 0032259 | biological_process | methylation |
A | 0160107 | molecular_function | tRNA (adenine(58)-N1)-methyltransferase activity |
B | 0008033 | biological_process | tRNA processing |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0030488 | biological_process | tRNA methylation |
B | 0031515 | cellular_component | tRNA (m1A) methyltransferase complex |
B | 0032259 | biological_process | methylation |
B | 0160107 | molecular_function | tRNA (adenine(58)-N1)-methyltransferase activity |
C | 0008033 | biological_process | tRNA processing |
C | 0008168 | molecular_function | methyltransferase activity |
C | 0030488 | biological_process | tRNA methylation |
C | 0031515 | cellular_component | tRNA (m1A) methyltransferase complex |
C | 0032259 | biological_process | methylation |
C | 0160107 | molecular_function | tRNA (adenine(58)-N1)-methyltransferase activity |
D | 0008033 | biological_process | tRNA processing |
D | 0008168 | molecular_function | methyltransferase activity |
D | 0030488 | biological_process | tRNA methylation |
D | 0031515 | cellular_component | tRNA (m1A) methyltransferase complex |
D | 0032259 | biological_process | methylation |
D | 0160107 | molecular_function | tRNA (adenine(58)-N1)-methyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM A 601 |
Chain | Residue |
A | THR72 |
A | LEU105 |
A | PHE119 |
A | GLU120 |
A | ALA121 |
A | PHE125 |
A | ASP148 |
A | PHE149 |
A | ASP165 |
A | TYR172 |
A | HOH625 |
A | GLN73 |
A | HOH711 |
A | HOH723 |
A | ILE75 |
A | GLY99 |
A | THR100 |
A | GLY101 |
A | SER102 |
A | GLY103 |
A | ALA104 |
site_id | AC2 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE SAM B 602 |
Chain | Residue |
B | GLN73 |
B | ILE75 |
B | GLY99 |
B | THR100 |
B | GLY101 |
B | SER102 |
B | GLY103 |
B | ALA104 |
B | LEU105 |
B | GLU120 |
B | ALA121 |
B | PHE125 |
B | ASP148 |
B | PHE149 |
B | ASP165 |
B | TYR172 |
B | HOH622 |
site_id | AC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE SAM D 603 |
Chain | Residue |
D | THR72 |
D | GLN73 |
D | ILE75 |
D | GLY99 |
D | THR100 |
D | SER102 |
D | GLY103 |
D | ALA104 |
D | LEU105 |
D | GLU120 |
D | ALA121 |
D | PHE125 |
D | ASP148 |
D | PHE149 |
D | ASP165 |
D | TYR172 |
D | HOH632 |
site_id | AC4 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE SAM C 604 |
Chain | Residue |
C | THR72 |
C | GLN73 |
C | ILE75 |
C | GLY99 |
C | THR100 |
C | SER102 |
C | GLY103 |
C | ALA104 |
C | LEU105 |
C | PHE119 |
C | GLU120 |
C | ALA121 |
C | PHE125 |
C | ASP148 |
C | PHE149 |
C | ASP165 |
C | TYR172 |
C | HOH659 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
A | GLU174 | |
A | ASP165 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
B | GLU174 | |
B | ASP165 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
C | GLU174 | |
C | ASP165 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
D | GLU174 | |
D | ASP165 |
site_id | CSA5 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
B | GLU120 | |
B | GLY99 | |
B | ASP165 |
site_id | CSA6 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
C | GLU120 | |
C | GLY99 | |
C | ASP165 |
site_id | CSA7 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1or8 |
Chain | Residue | Details |
D | GLU120 | |
D | GLY99 | |
D | ASP165 |