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2YVK

Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0009086biological_processmethionine biosynthetic process
A0016853molecular_functionisomerase activity
A0019284biological_processL-methionine salvage from S-adenosylmethionine
A0019509biological_processL-methionine salvage from methylthioadenosine
A0044237biological_processcellular metabolic process
A0044249biological_processcellular biosynthetic process
A0046523molecular_functionS-methyl-5-thioribose-1-phosphate isomerase activity
B0009086biological_processmethionine biosynthetic process
B0016853molecular_functionisomerase activity
B0019284biological_processL-methionine salvage from S-adenosylmethionine
B0019509biological_processL-methionine salvage from methylthioadenosine
B0044237biological_processcellular metabolic process
B0044249biological_processcellular biosynthetic process
B0046523molecular_functionS-methyl-5-thioribose-1-phosphate isomerase activity
C0009086biological_processmethionine biosynthetic process
C0016853molecular_functionisomerase activity
C0019284biological_processL-methionine salvage from S-adenosylmethionine
C0019509biological_processL-methionine salvage from methylthioadenosine
C0044237biological_processcellular metabolic process
C0044249biological_processcellular biosynthetic process
C0046523molecular_functionS-methyl-5-thioribose-1-phosphate isomerase activity
D0009086biological_processmethionine biosynthetic process
D0016853molecular_functionisomerase activity
D0019284biological_processL-methionine salvage from S-adenosylmethionine
D0019509biological_processL-methionine salvage from methylthioadenosine
D0044237biological_processcellular metabolic process
D0044249biological_processcellular biosynthetic process
D0046523molecular_functionS-methyl-5-thioribose-1-phosphate isomerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE MRU A 501
ChainResidue
AARG51
AALA239
AASP240
AASN250
ALYS251
APHE317
AGLY52
AALA53
AARG94
ACYS160
AALA162
AALA166
ATHR167
AGLN199

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE MRU B 502
ChainResidue
BARG51
BGLY52
BALA53
BPRO54
BILE56
BARG94
BCYS160
BALA162
BALA166
BGLN199
BALA239
BASP240
BASN250
BLYS251
BPHE317

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE MRU C 503
ChainResidue
CARG51
CGLY52
CALA53
CARG94
CCYS160
CALA162
CALA166
CTHR167
CTHR172
CGLN199
CALA239
CASP240
CASN250
CLYS251
CHOH533

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE MRU D 504
ChainResidue
DARG51
DGLY52
DALA53
DPRO54
DARG94
DCYS160
DALA162
DALA166
DGLN199
DALA239
DASP240
DASN250
DLYS251
DPHE317

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton donor
ChainResidueDetails
AASP240
BASP240
CASP240
DASP240

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING:
ChainResidueDetails
CARG51
CARG94
CGLN199
CASN250
DARG51
DARG94
DGLN199
DASN250
AARG51
AARG94
AGLN199
AASN250
BARG51
BARG94
BGLN199
BASN250

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Transition state stabilizer
ChainResidueDetails
ACYS160
BCYS160
CCYS160
DCYS160

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PDB entries from 2024-06-12

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