2YTZ
Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Homocystein in the orthorhombic crystal-lattice
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0002940 | biological_process | tRNA N2-guanine methylation |
A | 0003723 | molecular_function | RNA binding |
A | 0006400 | biological_process | tRNA modification |
A | 0008033 | biological_process | tRNA processing |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0016740 | molecular_function | transferase activity |
A | 0030488 | biological_process | tRNA methylation |
A | 0032259 | biological_process | methylation |
A | 0160102 | molecular_function | tRNA (guanine(10)-N2)-methyltransferase activity |
A | 0160104 | molecular_function | tRNA (guanine(26)-N2)-dimethyltransferase activity |
B | 0000049 | molecular_function | tRNA binding |
B | 0002940 | biological_process | tRNA N2-guanine methylation |
B | 0003723 | molecular_function | RNA binding |
B | 0006400 | biological_process | tRNA modification |
B | 0008033 | biological_process | tRNA processing |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0016740 | molecular_function | transferase activity |
B | 0030488 | biological_process | tRNA methylation |
B | 0032259 | biological_process | methylation |
B | 0160102 | molecular_function | tRNA (guanine(10)-N2)-methyltransferase activity |
B | 0160104 | molecular_function | tRNA (guanine(26)-N2)-dimethyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 1004 |
Chain | Residue |
A | HIS129 |
A | ARG130 |
A | ARG156 |
B | HOH1071 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 1005 |
Chain | Residue |
A | HIS174 |
A | PRO175 |
A | ARG176 |
A | ALA177 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 1007 |
Chain | Residue |
A | VAL338 |
A | GLU339 |
A | ARG354 |
A | HOH1162 |
A | LYS337 |
site_id | AC4 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SAH A 1001 |
Chain | Residue |
A | ARG36 |
A | LEU55 |
A | ALA57 |
A | ILE60 |
A | ARG61 |
A | ASN77 |
A | ASP78 |
A | ILE79 |
A | SER80 |
A | ASP119 |
A | ASP120 |
A | ALA121 |
A | ASP138 |
A | PHE140 |
A | PHE146 |
A | GLN348 |
A | HOH1009 |
A | HOH1012 |
A | HOH1030 |
A | HOH1043 |
A | HOH1095 |
A | HOH1100 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 1003 |
Chain | Residue |
B | HIS174 |
B | PRO175 |
B | ARG176 |
B | ALA177 |
B | HOH1046 |
site_id | AC6 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SAH B 1002 |
Chain | Residue |
B | PHE27 |
B | ARG36 |
B | LEU55 |
B | ALA57 |
B | ILE60 |
B | ARG61 |
B | ASP78 |
B | ILE79 |
B | SER80 |
B | ASP119 |
B | ASP120 |
B | ALA121 |
B | ASP138 |
B | PHE140 |
B | PHE146 |
B | HOH1013 |
B | HOH1030 |
B | HOH1037 |
B | HOH1116 |