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2YNJ

GroEL at sub-nanometer resolution by Constrained Single Particle Tomography

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006457biological_processprotein folding
A0016853molecular_functionisomerase activity
A0042026biological_processprotein refolding
A0051082molecular_functionunfolded protein binding
A0140662molecular_functionATP-dependent protein folding chaperone
B0000166molecular_functionnucleotide binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006457biological_processprotein folding
B0016853molecular_functionisomerase activity
B0042026biological_processprotein refolding
B0051082molecular_functionunfolded protein binding
B0140662molecular_functionATP-dependent protein folding chaperone
C0000166molecular_functionnucleotide binding
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006457biological_processprotein folding
C0016853molecular_functionisomerase activity
C0042026biological_processprotein refolding
C0051082molecular_functionunfolded protein binding
C0140662molecular_functionATP-dependent protein folding chaperone
D0000166molecular_functionnucleotide binding
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006457biological_processprotein folding
D0016853molecular_functionisomerase activity
D0042026biological_processprotein refolding
D0051082molecular_functionunfolded protein binding
D0140662molecular_functionATP-dependent protein folding chaperone
E0000166molecular_functionnucleotide binding
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0006457biological_processprotein folding
E0016853molecular_functionisomerase activity
E0042026biological_processprotein refolding
E0051082molecular_functionunfolded protein binding
E0140662molecular_functionATP-dependent protein folding chaperone
F0000166molecular_functionnucleotide binding
F0005524molecular_functionATP binding
F0005737cellular_componentcytoplasm
F0006457biological_processprotein folding
F0016853molecular_functionisomerase activity
F0042026biological_processprotein refolding
F0051082molecular_functionunfolded protein binding
F0140662molecular_functionATP-dependent protein folding chaperone
G0000166molecular_functionnucleotide binding
G0005524molecular_functionATP binding
G0005737cellular_componentcytoplasm
G0006457biological_processprotein folding
G0016853molecular_functionisomerase activity
G0042026biological_processprotein refolding
G0051082molecular_functionunfolded protein binding
G0140662molecular_functionATP-dependent protein folding chaperone
H0000166molecular_functionnucleotide binding
H0005524molecular_functionATP binding
H0005737cellular_componentcytoplasm
H0006457biological_processprotein folding
H0016853molecular_functionisomerase activity
H0042026biological_processprotein refolding
H0051082molecular_functionunfolded protein binding
H0140662molecular_functionATP-dependent protein folding chaperone
I0000166molecular_functionnucleotide binding
I0005524molecular_functionATP binding
I0005737cellular_componentcytoplasm
I0006457biological_processprotein folding
I0016853molecular_functionisomerase activity
I0042026biological_processprotein refolding
I0051082molecular_functionunfolded protein binding
I0140662molecular_functionATP-dependent protein folding chaperone
J0000166molecular_functionnucleotide binding
J0005524molecular_functionATP binding
J0005737cellular_componentcytoplasm
J0006457biological_processprotein folding
J0016853molecular_functionisomerase activity
J0042026biological_processprotein refolding
J0051082molecular_functionunfolded protein binding
J0140662molecular_functionATP-dependent protein folding chaperone
K0000166molecular_functionnucleotide binding
K0005524molecular_functionATP binding
K0005737cellular_componentcytoplasm
K0006457biological_processprotein folding
K0016853molecular_functionisomerase activity
K0042026biological_processprotein refolding
K0051082molecular_functionunfolded protein binding
K0140662molecular_functionATP-dependent protein folding chaperone
L0000166molecular_functionnucleotide binding
L0005524molecular_functionATP binding
L0005737cellular_componentcytoplasm
L0006457biological_processprotein folding
L0016853molecular_functionisomerase activity
L0042026biological_processprotein refolding
L0051082molecular_functionunfolded protein binding
L0140662molecular_functionATP-dependent protein folding chaperone
M0000166molecular_functionnucleotide binding
M0005524molecular_functionATP binding
M0005737cellular_componentcytoplasm
M0006457biological_processprotein folding
M0016853molecular_functionisomerase activity
M0042026biological_processprotein refolding
M0051082molecular_functionunfolded protein binding
M0140662molecular_functionATP-dependent protein folding chaperone
N0000166molecular_functionnucleotide binding
N0005524molecular_functionATP binding
N0005737cellular_componentcytoplasm
N0006457biological_processprotein folding
N0016853molecular_functionisomerase activity
N0042026biological_processprotein refolding
N0051082molecular_functionunfolded protein binding
N0140662molecular_functionATP-dependent protein folding chaperone
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS A 549
ChainResidue
ATHR30
ATHR91
AGLY414
AGLY415
ATYR478
AASN479
AALA480
AALA481
AILE493
AASP495
ATL551
AGLY32
AMG553
APRO33
AASP52
AGLY53
AASP87
AGLY88
ATHR89
ATHR90

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL A 550
ChainResidue
ACYS458
AGLU483
HASN112

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL A 551
ChainResidue
ATHR30
ALYS51
ATHR90
AAGS549

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL A 552
ChainResidue
ASER217
APHE219
AGLN319

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 553
ChainResidue
AASP87
AAGS549

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL A 554
ChainResidue
AASN112
AASP115
BCYS458
BGLU483

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS B 549
ChainResidue
BTHR30
BGLY32
BPRO33
BASP52
BGLY53
BASP87
BGLY88
BTHR89
BTHR90
BTHR91
BGLY414
BGLY415
BTYR478
BASN479
BALA480
BALA481
BILE493
BASP495
BTL551
BMG553

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL B 550
ChainResidue
AASN112
BCYS458
BGLU483

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL B 551
ChainResidue
BTHR30
BLYS51
BTHR90
BAGS549

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL B 552
ChainResidue
BSER217
BPHE219
BGLN319

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG B 553
ChainResidue
BASP87
BAGS549

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL B 554
ChainResidue
BASN112
BASP115
CCYS458
CGLU483

site_idBC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS C 549
ChainResidue
CTHR30
CGLY32
CPRO33
CASP52
CGLY53
CASP87
CGLY88
CTHR89
CTHR90
CTHR91
CGLY414
CGLY415
CTYR478
CASN479
CALA480
CALA481
CILE493
CASP495
CTL551
CMG553

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL C 550
ChainResidue
BASN112
CCYS458
CGLU483

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL C 551
ChainResidue
CTHR30
CLYS51
CTHR90
CAGS549

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL C 552
ChainResidue
CSER217
CPHE219
CGLN319

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG C 553
ChainResidue
CASP87
CAGS549

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL C 554
ChainResidue
CASN112
CASP115
DCYS458
DGLU483

site_idCC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS D 549
ChainResidue
DTHR30
DGLY32
DPRO33
DASP52
DGLY53
DASP87
DGLY88
DTHR89
DTHR90
DTHR91
DGLY414
DGLY415
DTYR478
DASN479
DALA480
DALA481
DILE493
DASP495
DTL551
DMG553

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL D 550
ChainResidue
CASN112
DCYS458
DGLU483

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL D 551
ChainResidue
DTHR30
DLYS51
DTHR90
DAGS549

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL D 552
ChainResidue
DSER217
DPHE219
DGLN319

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG D 553
ChainResidue
DASP87
DAGS549

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL D 554
ChainResidue
DASN112
DASP115
ECYS458
EGLU483

site_idCC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS E 549
ChainResidue
ETHR30
EGLY32
EPRO33
EASP52
EGLY53
EASP87
EGLY88
ETHR89
ETHR90
ETHR91
EGLY414
EGLY415
ETYR478
EASN479
EALA480
EALA481
EILE493
EASP495
ETL551
EMG553

site_idCC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL E 550
ChainResidue
DASN112
ECYS458
EGLU483

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL E 551
ChainResidue
ETHR30
ELYS51
ETHR90
EAGS549

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL E 552
ChainResidue
ESER217
EPHE219
EGLN319

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG E 553
ChainResidue
EASP87
EAGS549

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL E 554
ChainResidue
EASN112
EASP115
FCYS458
FGLU483

site_idDC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS F 549
ChainResidue
FTHR30
FGLY32
FPRO33
FASP52
FGLY53
FASP87
FGLY88
FTHR89
FTHR90
FTHR91
FGLY414
FGLY415
FTYR478
FASN479
FALA480
FALA481
FILE493
FASP495
FTL551
FMG553

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL F 550
ChainResidue
EASN112
FCYS458
FGLU483

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL F 551
ChainResidue
FTHR30
FLYS51
FTHR90
FAGS549

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL F 552
ChainResidue
FSER217
FPHE219
FGLN319

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG F 553
ChainResidue
FASP87
FAGS549

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL F 554
ChainResidue
FASN112
FASP115
HCYS458
HGLU483

site_idEC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS G 549
ChainResidue
GTHR30
GGLY32
GPRO33
GASP52
GGLY53
GASP87
GGLY88
GTHR89
GTHR90
GTHR91
GGLY414
GGLY415
GTYR478
GASN479
GALA480
GALA481
GILE493
GASP495
GTL551
GMG553

site_idEC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL G 550
ChainResidue
GCYS458
GGLU483
NASN112

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL G 551
ChainResidue
GTHR30
GLYS51
GTHR90
GAGS549

site_idEC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL G 552
ChainResidue
GSER217
GPHE219
GGLN319

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 553
ChainResidue
GASP87
GAGS549

site_idEC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL G 554
ChainResidue
GASN112
GASP115
ICYS458
IGLU483

site_idEC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS H 549
ChainResidue
HTHR30
HGLY32
HPRO33
HASP52
HGLY53
HASP87
HGLY88
HTHR89
HTHR90
HTHR91
HGLY414
HGLY415
HTYR478
HASN479
HALA480
HALA481
HILE493
HASP495
HTL551
HMG553

site_idEC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL H 550
ChainResidue
FASN112
HCYS458
HGLU483

site_idEC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL H 551
ChainResidue
HTHR30
HLYS51
HTHR90
HAGS549

site_idFC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL H 552
ChainResidue
HSER217
HPHE219
HGLN319

site_idFC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG H 553
ChainResidue
HASP87
HAGS549

site_idFC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL H 554
ChainResidue
ACYS458
AGLU483
HASN112
HASP115

site_idFC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS I 549
ChainResidue
ITHR30
IGLY32
IPRO33
IASP52
IGLY53
IASP87
IGLY88
ITHR89
ITHR90
ITHR91
IGLY414
IGLY415
ITYR478
IASN479
IALA480
IALA481
IILE493
IASP495
ITL551
IMG553

site_idFC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL I 550
ChainResidue
GASN112
ICYS458
IGLU483

site_idFC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL I 551
ChainResidue
ITHR30
ILYS51
ITHR90
IAGS549

site_idFC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL I 552
ChainResidue
ISER217
IPHE219
IGLN319

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG I 553
ChainResidue
IASP87
IAGS549

site_idFC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL I 554
ChainResidue
IASN112
IASP115
JCYS458
JGLU483

site_idGC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS J 549
ChainResidue
JTHR30
JGLY32
JPRO33
JASP52
JGLY53
JASP87
JGLY88
JTHR89
JTHR90
JTHR91
JGLY414
JGLY415
JTYR478
JASN479
JALA480
JALA481
JILE493
JASP495
JTL551
JMG553

site_idGC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL J 550
ChainResidue
IASN112
JCYS458
JGLU483

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL J 551
ChainResidue
JTHR30
JLYS51
JTHR90
JAGS549

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL J 552
ChainResidue
JSER217
JPHE219
JGLN319

site_idGC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG J 553
ChainResidue
JASP87
JAGS549

site_idGC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL J 554
ChainResidue
JASN112
JASP115
KCYS458
KGLU483

site_idGC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS K 549
ChainResidue
KTHR30
KGLY32
KPRO33
KASP52
KGLY53
KASP87
KGLY88
KTHR89
KTHR90
KTHR91
KGLY414
KGLY415
KTYR478
KASN479
KALA480
KALA481
KILE493
KASP495
KTL551
KMG553

site_idGC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL K 550
ChainResidue
JASN112
KCYS458
KGLU483

site_idGC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL K 551
ChainResidue
KTHR30
KLYS51
KTHR90
KAGS549

site_idHC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL K 552
ChainResidue
KSER217
KPHE219
KGLN319

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG K 553
ChainResidue
KASP87
KAGS549

site_idHC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL K 554
ChainResidue
KASN112
KASP115
LCYS458
LGLU483

site_idHC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS L 549
ChainResidue
LTHR30
LGLY32
LPRO33
LASP52
LGLY53
LASP87
LGLY88
LTHR89
LTHR90
LTHR91
LGLY414
LGLY415
LTYR478
LASN479
LALA480
LALA481
LILE493
LASP495
LTL551
LMG553

site_idHC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL L 550
ChainResidue
KASN112
LCYS458
LGLU483

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL L 551
ChainResidue
LTHR30
LLYS51
LTHR90
LAGS549

site_idHC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL L 552
ChainResidue
LSER217
LPHE219
LGLN319

site_idHC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG L 553
ChainResidue
LASP87
LAGS549

site_idHC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL L 554
ChainResidue
LASN112
LASP115
MCYS458
MGLU483

site_idIC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS M 549
ChainResidue
MTHR30
MGLY32
MPRO33
MASP52
MGLY53
MASP87
MGLY88
MTHR89
MTHR90
MTHR91
MGLY414
MGLY415
MTYR478
MASN479
MALA480
MALA481
MILE493
MASP495
MTL551
MMG553

site_idIC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL M 550
ChainResidue
LASN112
MCYS458
MGLU483

site_idIC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL M 551
ChainResidue
MTHR30
MLYS51
MTHR90
MAGS549

site_idIC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL M 552
ChainResidue
MSER217
MPHE219
MGLN319

site_idIC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG M 553
ChainResidue
MASP87
MAGS549

site_idIC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL M 554
ChainResidue
MASN112
MASP115
NCYS458
NGLU483

site_idIC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AGS N 549
ChainResidue
NTHR30
NGLY32
NPRO33
NASP52
NGLY53
NASP87
NGLY88
NTHR89
NTHR90
NTHR91
NGLY414
NGLY415
NTYR478
NASN479
NALA480
NALA481
NILE493
NASP495
NTL551
NMG553

site_idIC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL N 550
ChainResidue
MASN112
NCYS458
NGLU483

site_idIC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL N 551
ChainResidue
NTHR30
NLYS51
NTHR90
NAGS549

site_idJC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TL N 552
ChainResidue
NSER217
NPHE219
NGLN319

site_idJC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG N 553
ChainResidue
NASP87
NAGS549

site_idJC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TL N 554
ChainResidue
GCYS458
GGLU483
NASN112
NASP115

Functional Information from PROSITE/UniProt
site_idPS00296
Number of Residues12
DetailsCHAPERONINS_CPN60 Chaperonins cpn60 signature. AAVEEGVVaGGG
ChainResidueDetails
AALA405-GLY416

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues168
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00600","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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