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2YNC

Plasmodium vivax N-myristoyltransferase in complex with YnC12-CoA thioester.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
A0046872molecular_functionmetal ion binding
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
B0046872molecular_functionmetal ion binding
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS A 999
ChainResidue
AGLU159
APHE281
ATRP289
AHOH2397

site_idAC2
Number of Residues35
DetailsBINDING SITE FOR RESIDUE YNC A 1000
ChainResidue
ATYR95
AVAL96
AASN161
APHE162
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ATHR183
AILE186
ATHR197
ALEU202
ATYR393
AMG1412
AHOH2001
AHOH2004
AHOH2245
AHOH2250
AHOH2459
AHOH2460
AHOH2461
AHOH2462
AHOH2463
AHOH2464
ATYR28
ALYS29
APHE30
ATRP31
AASN94

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DMS B 999
ChainResidue
BGLU159
BPHE281
BTRP289
BHOH2173
BHOH2354

site_idAC4
Number of Residues35
DetailsBINDING SITE FOR RESIDUE YNC B 1000
ChainResidue
BTYR28
BLYS29
BPHE30
BTRP31
BTYR95
BVAL96
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BILE186
BASN187
BALA194
BTHR197
BLEU202
BTYR393
BMG1411
BHOH2001
BHOH2002
BHOH2199
BHOH2203
BHOH2407
BHOH2408
BHOH2409
BHOH2410
BHOH2411
BHOH2412

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DMS C 999
ChainResidue
CGLU159
CHOH2177
CHOH2343

site_idAC6
Number of Residues36
DetailsBINDING SITE FOR RESIDUE YNC C 1000
ChainResidue
CPRO176
CTHR183
CILE186
CASN187
CALA194
CTYR196
CTHR197
CLEU202
CTYR393
CMG1411
CHOH2003
CHOH2207
CHOH2214
CHOH2215
CHOH2381
CHOH2382
CHOH2383
CHOH2384
CHOH2385
CTYR28
CLYS29
CPHE30
CTRP31
CASN94
CTYR95
CVAL96
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1411
ChainResidue
AARG210
ALYS373
AHOH2277
AHOH2440
AHOH2465
BARG210
BLYS373

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1411
ChainResidue
BLEU169
BSER171
BLYS172
BARG173
BLEU174
BYNC1000

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1412
ChainResidue
ALEU169
ASER171
ALYS172
AARG173
ALEU174
AYNC1000

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 1411
ChainResidue
CLEU169
CSER171
CLYS172
CARG173
CLEU174
CYNC1000

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1500
ChainResidue
AARG254
ALEU255

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1413
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358
AHOH2087

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 1412
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358
BHOH2276

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL C 1412
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358
CHOH2273

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL C 1500
ChainResidue
CARG254
CLEU255

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
CGLU159-LYS167
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
CLYS380-GLY386
ALYS380-GLY386

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PDB entries from 2024-07-17

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