Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2YIA

Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0001172	biological_process	RNA-templated transcription
A	0003968	molecular_function	RNA-directed RNA polymerase activity
A	0005525	molecular_function	GTP binding
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0019079	biological_process	viral genome replication
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0044423	cellular_component	virion component
B	0000166	molecular_function	nucleotide binding
B	0001172	biological_process	RNA-templated transcription
B	0003968	molecular_function	RNA-directed RNA polymerase activity
B	0005525	molecular_function	GTP binding
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0019079	biological_process	viral genome replication
B	0034062	molecular_function	5'-3' RNA polymerase activity
B	0044423	cellular_component	virion component
C	0000166	molecular_function	nucleotide binding
C	0001172	biological_process	RNA-templated transcription
C	0003968	molecular_function	RNA-directed RNA polymerase activity
C	0005525	molecular_function	GTP binding
C	0016740	molecular_function	transferase activity
C	0016779	molecular_function	nucleotidyltransferase activity
C	0019079	biological_process	viral genome replication
C	0034062	molecular_function	5'-3' RNA polymerase activity
C	0044423	cellular_component	virion component
D	0000166	molecular_function	nucleotide binding
D	0001172	biological_process	RNA-templated transcription
D	0003968	molecular_function	RNA-directed RNA polymerase activity
D	0005525	molecular_function	GTP binding
D	0016740	molecular_function	transferase activity
D	0016779	molecular_function	nucleotidyltransferase activity
D	0019079	biological_process	viral genome replication
D	0034062	molecular_function	5'-3' RNA polymerase activity
D	0044423	cellular_component	virion component
E	0000166	molecular_function	nucleotide binding
E	0001172	biological_process	RNA-templated transcription
E	0003968	molecular_function	RNA-directed RNA polymerase activity
E	0005525	molecular_function	GTP binding
E	0016740	molecular_function	transferase activity
E	0016779	molecular_function	nucleotidyltransferase activity
E	0019079	biological_process	viral genome replication
E	0034062	molecular_function	5'-3' RNA polymerase activity
E	0044423	cellular_component	virion component
F	0000166	molecular_function	nucleotide binding
F	0001172	biological_process	RNA-templated transcription
F	0003968	molecular_function	RNA-directed RNA polymerase activity
F	0005525	molecular_function	GTP binding
F	0016740	molecular_function	transferase activity
F	0016779	molecular_function	nucleotidyltransferase activity
F	0019079	biological_process	viral genome replication
F	0034062	molecular_function	5'-3' RNA polymerase activity
F	0044423	cellular_component	virion component
G	0000166	molecular_function	nucleotide binding
G	0001172	biological_process	RNA-templated transcription
G	0003968	molecular_function	RNA-directed RNA polymerase activity
G	0005525	molecular_function	GTP binding
G	0016740	molecular_function	transferase activity
G	0016779	molecular_function	nucleotidyltransferase activity
G	0019079	biological_process	viral genome replication
G	0034062	molecular_function	5'-3' RNA polymerase activity
G	0044423	cellular_component	virion component
H	0000166	molecular_function	nucleotide binding
H	0001172	biological_process	RNA-templated transcription
H	0003968	molecular_function	RNA-directed RNA polymerase activity
H	0005525	molecular_function	GTP binding
H	0016740	molecular_function	transferase activity
H	0016779	molecular_function	nucleotidyltransferase activity
H	0019079	biological_process	viral genome replication
H	0034062	molecular_function	5'-3' RNA polymerase activity
H	0044423	cellular_component	virion component

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K A 1002

Chain	Residue
A	VAL177
A	ASN182
A	ASN184
A	ASN409
A	GLY512
A	ASN514

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K B 1002

Chain	Residue
B	ASN409
B	GLY512
B	ASN514
B	VAL177
B	ASN182
B	ASN184

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K C 1002

Chain	Residue
C	VAL177
C	ASN182
C	ASN184
C	ASN409
C	GLY512
C	ASN514

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K D 1002

Chain	Residue
D	VAL177
D	ASN182
D	ASN184
D	ASN409
D	GLY512
D	ASN514

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K E 1002

Chain	Residue
E	VAL177
E	ASN182
E	ASN184
E	ASN409
E	GLY512
E	ASN514

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K F 1002

Chain	Residue
F	VAL177
F	ASN182
F	ASN184
F	ASN409
F	GLY512
F	ASN514

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K G 1002

Chain	Residue
G	VAL177
G	ASN182
G	ASN184
G	ASN409
G	GLY512
G	ASN514

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K H 1002

Chain	Residue
H	VAL177
H	ASN182
H	ASN184
H	ASN409
H	GLY512
H	ASN514

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	BINDING: BINDING => ECO:0000255

Chain	Residue	Details
A	GLY248
B	GLY248
C	GLY248
D	GLY248
E	GLY248
F	GLY248
G	GLY248
H	GLY248

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)