2YI9
Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus in complex with magnesium
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001172 | biological_process | RNA-templated transcription |
| A | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| A | 0005525 | molecular_function | GTP binding |
| A | 0019079 | biological_process | viral genome replication |
| A | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| A | 0044423 | cellular_component | virion component |
| B | 0001172 | biological_process | RNA-templated transcription |
| B | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| B | 0005525 | molecular_function | GTP binding |
| B | 0019079 | biological_process | viral genome replication |
| B | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| B | 0044423 | cellular_component | virion component |
| C | 0001172 | biological_process | RNA-templated transcription |
| C | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| C | 0005525 | molecular_function | GTP binding |
| C | 0019079 | biological_process | viral genome replication |
| C | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| C | 0044423 | cellular_component | virion component |
| D | 0001172 | biological_process | RNA-templated transcription |
| D | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| D | 0005525 | molecular_function | GTP binding |
| D | 0019079 | biological_process | viral genome replication |
| D | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| D | 0044423 | cellular_component | virion component |
| E | 0001172 | biological_process | RNA-templated transcription |
| E | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| E | 0005525 | molecular_function | GTP binding |
| E | 0019079 | biological_process | viral genome replication |
| E | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| E | 0044423 | cellular_component | virion component |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1793 |
| Chain | Residue |
| A | ASN389 |
| A | ASP402 |
| A | HOH2319 |
| A | HOH2320 |
| A | HOH2321 |
| A | HOH2329 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K A 1794 |
| Chain | Residue |
| A | ASN409 |
| A | GLY512 |
| A | ASN514 |
| A | VAL177 |
| A | ASN182 |
| A | ASN184 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 1795 |
| Chain | Residue |
| A | MET174 |
| A | ASN320 |
| A | HOH2029 |
| A | HOH2136 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 1793 |
| Chain | Residue |
| B | ASN389 |
| B | ASP402 |
| B | HOH2367 |
| B | HOH2368 |
| B | HOH2369 |
| B | HOH2374 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K B 1794 |
| Chain | Residue |
| B | VAL177 |
| B | ASN182 |
| B | ASN184 |
| B | ASN409 |
| B | GLY512 |
| B | ASN514 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1795 |
| Chain | Residue |
| B | MET174 |
| B | ASN320 |
| B | HOH2161 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG C 1793 |
| Chain | Residue |
| C | ASN389 |
| C | ASP402 |
| C | HOH2349 |
| C | HOH2350 |
| C | HOH2351 |
| C | HOH2359 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K C 1794 |
| Chain | Residue |
| C | VAL177 |
| C | ASN182 |
| C | ASN184 |
| C | ASN409 |
| C | GLY512 |
| C | ASN514 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 1795 |
| Chain | Residue |
| C | MET174 |
| C | ASN320 |
| C | HOH2146 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG D 1793 |
| Chain | Residue |
| D | ASN389 |
| D | ASP402 |
| D | HOH2385 |
| D | HOH2386 |
| D | HOH2387 |
| D | HOH2394 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K D 1794 |
| Chain | Residue |
| D | VAL177 |
| D | ASN182 |
| D | ASN184 |
| D | ASN409 |
| D | GLY512 |
| D | ASN514 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL D 1795 |
| Chain | Residue |
| D | MET174 |
| D | ASN320 |
| D | HOH2031 |
| D | HOH2172 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG E 1793 |
| Chain | Residue |
| E | ASN389 |
| E | ASP402 |
| E | HOH2405 |
| E | HOH2406 |
| E | HOH2407 |
| E | HOH2414 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K E 1794 |
| Chain | Residue |
| E | VAL177 |
| E | ASN182 |
| E | ASN184 |
| E | ASN409 |
| E | GLY512 |
| E | ASN514 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL E 1795 |
| Chain | Residue |
| E | MET174 |
| E | ASN320 |
| E | HOH2175 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL E 1796 |
| Chain | Residue |
| E | ARG727 |
| E | GLN731 |
| E | GLN769 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 5 |
| Details | BINDING: BINDING => ECO:0000255 |
| Chain | Residue | Details |
| A | GLY248 | |
| B | GLY248 | |
| C | GLY248 | |
| D | GLY248 | |
| E | GLY248 |
