2YI9

Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus in complex with magnesium

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0001172	biological_process	RNA-templated transcription
A	0003968	molecular_function	RNA-directed RNA polymerase activity
A	0005525	molecular_function	GTP binding
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0019079	biological_process	viral genome replication
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0044423	cellular_component	virion component
B	0000166	molecular_function	nucleotide binding
B	0001172	biological_process	RNA-templated transcription
B	0003968	molecular_function	RNA-directed RNA polymerase activity
B	0005525	molecular_function	GTP binding
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0019079	biological_process	viral genome replication
B	0034062	molecular_function	5'-3' RNA polymerase activity
B	0044423	cellular_component	virion component
C	0000166	molecular_function	nucleotide binding
C	0001172	biological_process	RNA-templated transcription
C	0003968	molecular_function	RNA-directed RNA polymerase activity
C	0005525	molecular_function	GTP binding
C	0016740	molecular_function	transferase activity
C	0016779	molecular_function	nucleotidyltransferase activity
C	0019079	biological_process	viral genome replication
C	0034062	molecular_function	5'-3' RNA polymerase activity
C	0044423	cellular_component	virion component
D	0000166	molecular_function	nucleotide binding
D	0001172	biological_process	RNA-templated transcription
D	0003968	molecular_function	RNA-directed RNA polymerase activity
D	0005525	molecular_function	GTP binding
D	0016740	molecular_function	transferase activity
D	0016779	molecular_function	nucleotidyltransferase activity
D	0019079	biological_process	viral genome replication
D	0034062	molecular_function	5'-3' RNA polymerase activity
D	0044423	cellular_component	virion component
E	0000166	molecular_function	nucleotide binding
E	0001172	biological_process	RNA-templated transcription
E	0003968	molecular_function	RNA-directed RNA polymerase activity
E	0005525	molecular_function	GTP binding
E	0016740	molecular_function	transferase activity
E	0016779	molecular_function	nucleotidyltransferase activity
E	0019079	biological_process	viral genome replication
E	0034062	molecular_function	5'-3' RNA polymerase activity
E	0044423	cellular_component	virion component

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 1793

Chain	Residue
A	ASN389
A	ASP402
A	HOH2319
A	HOH2320
A	HOH2321
A	HOH2329

---

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K A 1794

Chain	Residue
A	ASN409
A	GLY512
A	ASN514
A	VAL177
A	ASN182
A	ASN184

---

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL A 1795

Chain	Residue
A	MET174
A	ASN320
A	HOH2029
A	HOH2136

---

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG B 1793

Chain	Residue
B	ASN389
B	ASP402
B	HOH2367
B	HOH2368
B	HOH2369
B	HOH2374

---

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K B 1794

Chain	Residue
B	VAL177
B	ASN182
B	ASN184
B	ASN409
B	GLY512
B	ASN514

---

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 1795

Chain	Residue
B	MET174
B	ASN320
B	HOH2161

---

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1793

Chain	Residue
C	ASN389
C	ASP402
C	HOH2349
C	HOH2350
C	HOH2351
C	HOH2359

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K C 1794

Chain	Residue
C	VAL177
C	ASN182
C	ASN184
C	ASN409
C	GLY512
C	ASN514

---

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL C 1795

Chain	Residue
C	MET174
C	ASN320
C	HOH2146

---

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG D 1793

Chain	Residue
D	ASN389
D	ASP402
D	HOH2385
D	HOH2386
D	HOH2387
D	HOH2394

---

site_id	BC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K D 1794

Chain	Residue
D	VAL177
D	ASN182
D	ASN184
D	ASN409
D	GLY512
D	ASN514

---

site_id	BC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL D 1795

Chain	Residue
D	MET174
D	ASN320
D	HOH2031
D	HOH2172

---

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1793

Chain	Residue
E	ASN389
E	ASP402
E	HOH2405
E	HOH2406
E	HOH2407
E	HOH2414

---

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K E 1794

Chain	Residue
E	VAL177
E	ASN182
E	ASN184
E	ASN409
E	GLY512
E	ASN514

---

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL E 1795

Chain	Residue
E	MET174
E	ASN320
E	HOH2175

---

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL E 1796

Chain	Residue
E	ARG727
E	GLN731
E	GLN769

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1020
Details	Domain: {"description":"RdRp catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00539","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	100
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	35
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---