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2YG4

Structure-based redesign of cofactor binding in Putrescine Oxidase: wild type bound to Putrescine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016491molecular_functionoxidoreductase activity
B0000166molecular_functionnucleotide binding
B0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE FAD A 600
ChainResidue
AVAL11
AGLY41
AGLY42
AARG43
AGLY57
AGLY58
AGLN59
ATRP60
AVAL235
AALA263
AVAL264
AGLY12
ATRP385
ATRP390
ATYR395
ACYS422
ASER423
AGLN431
AHIS432
AVAL433
AALA436
AHOH2010
AGLY14
AHOH2025
AHOH2030
AHOH2077
AHOH2260
AHOH2299
B4HA601
APRO15
ASER16
AILE34
AGLU35
AALA36
AARG37

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 4HA A 601
ChainResidue
AHOH2395
AHOH2396
BGLY172
BGLU324
BTYR395
BHIS432
BFAD600

site_idAC3
Number of Residues36
DetailsBINDING SITE FOR RESIDUE FAD B 600
ChainResidue
A4HA601
BVAL11
BGLY12
BGLY14
BPRO15
BSER16
BILE34
BGLU35
BALA36
BARG37
BGLY41
BGLY42
BARG43
BTHR44
BGLY57
BGLY58
BGLN59
BTRP60
BVAL235
BALA263
BVAL264
BTRP385
BTRP390
BALA394
BTYR395
BCYS422
BSER423
BGLN431
BHIS432
BVAL433
BALA436
BHOH2009
BHOH2023
BHOH2027
BHOH2061
BHOH2209

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 4HA B 601
ChainResidue
AGLY172
AGLU324
ATYR395
AFAD600
AHOH2387
BHOH2303

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1451
ChainResidue
AALA131
AGLU132
ATRP135
ASER411
AARG412
AALA426
ATYR430
AHOH2397

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1452
ChainResidue
AARG412
AHIS419
APHE420
AARG442
AASP446

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 1453
ChainResidue
AARG141
AHOH2398

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1454
ChainResidue
ALEU353
AALA355
AARG358
AHOH2328
AHOH2329

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1455
ChainResidue
AVAL53
AGLY212
AASN330
AHOH2316
AHOH2399

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1452
ChainResidue
BARG412
BHIS419
BPHE420
BMET439
BTHR443
BASP446
BHOH2304

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1453
ChainResidue
AASP348
APHE351
BARG280
BARG281
BHOH2216
BHOH2305

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1454
ChainResidue
AHOH2278
BLEU353
BALA355
BARG358
BHOH2306

222415

PDB entries from 2024-07-10

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