English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2YF3

Crystal structure of DR2231, the MazG-like protein from Deinococcus radiodurans, complex with manganese

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0046872	molecular_function	metal ion binding
A	0047429	molecular_function	nucleoside triphosphate diphosphatase activity
B	0046872	molecular_function	metal ion binding
B	0047429	molecular_function	nucleoside triphosphate diphosphatase activity
C	0046872	molecular_function	metal ion binding
C	0047429	molecular_function	nucleoside triphosphate diphosphatase activity
D	0046872	molecular_function	metal ion binding
D	0047429	molecular_function	nucleoside triphosphate diphosphatase activity
E	0046872	molecular_function	metal ion binding
E	0047429	molecular_function	nucleoside triphosphate diphosphatase activity
F	0046872	molecular_function	metal ion binding
F	0047429	molecular_function	nucleoside triphosphate diphosphatase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN A 1145

Chain	Residue
A	GLU47
A	GLU50
A	GLU79
A	ASP82
A	HOH2127
A	HOH2128

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 A 1146

Chain	Residue
A	HOH2130
A	HOH2131
A	ARG19
A	ARG38
A	HOH2129

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 1147

Chain	Residue
A	ARG118
A	LYS122

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 1148

Chain	Residue
A	SER69
A	GLY71
E	GLY128

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 1149

Chain	Residue
A	ARG135
A	GOL1150
B	PRO75
C	PRO131

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 1150

Chain	Residue
A	ALA132
A	ASP133
A	VAL134
A	ARG135
A	GOL1149
B	HIS78

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 1151

Chain	Residue
A	PRO-2
A	GLU47
A	ASP82
A	HOH2132
B	VAL105
B	ASN109

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 1152

Chain	Residue
A	GLU27
A	ASP97
A	HOH2133

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN B 1148

Chain	Residue
B	GLU47
B	GLU50
B	GLU79
B	ASP82
B	HOH2099
B	HOH2100

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN B 1149

Chain	Residue
B	GLU27
B	HOH2101
B	HOH2102
B	HOH2103
B	HOH2104
B	HOH2105

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 B 1150

Chain	Residue
B	ARG38
B	HOH2106
B	HOH2107
B	HOH2108
C	ARG19

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 B 1151

Chain	Residue
A	HOH2126
B	SER69
B	GLY71
B	HOH2109
C	GLY128
C	ARG130

site_id	BC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 B 1152

Chain	Residue
B	ARG118
B	LYS122

site_id	BC5
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL B 1153

Chain	Residue
A	ASP45
A	SER48
A	ALA49
A	ARG52
B	ASP45
B	SER48
B	ALA49
B	ARG52
B	HOH2110

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL B 1154

Chain	Residue
A	ALA74
A	HIS78
B	ALA132
B	VAL134
B	ARG135

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 1155

Chain	Residue
B	PRO26
B	GLU27
B	ARG28

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 1156

Chain	Residue
A	HOH2094
B	ARG13
B	GLU16
B	HOH2112

site_id	BC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 1157

Chain	Residue
B	PRO33
B	PRO34
B	HOH2113

site_id	CC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN C 1148

Chain	Residue
F	HOH2095
F	HOH2096
F	HOH2097
F	HOH2098
F	HOH2099
F	HOH2100

site_id	CC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN C 1149

Chain	Residue
C	GLU47
C	GLU50
C	GLU79
C	ASP82
C	HOH2150
C	HOH2151

site_id	CC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 C 1150

Chain	Residue
C	HOH2154
F	GLU127
F	GLY128
C	SER69
C	GLY71
C	HOH2152

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 C 1151

Chain	Residue
C	ARG38
C	HOH2155
C	HOH2156
D	HOH2079
E	ARG19

site_id	CC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE SO4 C 1152

Chain	Residue
A	ARG19

site_id	CC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL C 1153

Chain	Residue
C	GLU47
C	ASP82
C	TYR85
C	HOH2158
D	VAL105
D	ASN109
E	PRO-2

site_id	CC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL C 1154

Chain	Residue
A	VAL105
A	ASN109
B	GLU47
B	ASP82
C	PRO-2

site_id	CC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE GOL C 1155

Chain	Residue
C	ASP45
C	SER48
C	ALA49
C	ARG52
C	HOH2077
C	HOH2159
D	SER48
D	ARG52
D	GOL1154
D	HOH2150

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL C 1156

Chain	Residue
C	PRO26
C	GLU27
C	HOH2160

site_id	DC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL C 1157

Chain	Residue
C	ARG118
C	LYS122
C	HOH2161

site_id	DC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL C 1158

Chain	Residue
C	ARG107
C	SER111
C	TRP129
C	ARG130

site_id	DC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL C 1159

Chain	Residue
C	HIS57
C	HOH2162
F	ARG118
F	LYS122

site_id	DC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL C 1160

Chain	Residue
A	TRP129
C	ARG135
C	HOH2163
C	HOH2164

site_id	DC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN D 1148

Chain	Residue
D	GLU47
D	GLU50
D	GLU79
D	ASP82
F	HOH2093
F	HOH2094

site_id	DC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN D 1149

Chain	Residue
D	HOH2139
D	HOH2140
D	HOH2141
D	HOH2142
D	HOH2143
D	HOH2144

site_id	DC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 D 1150

Chain	Residue
D	LYS112
D	LYS125
D	HOH2155

site_id	DC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 D 1151

Chain	Residue
D	ARG19
D	HOH2146

site_id	DC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 1152

Chain	Residue
C	GLN142
D	SER69
D	ALA70
D	GLY71
D	HOH2147

site_id	EC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 1153

Chain	Residue
B	PRO-2
C	VAL105
C	ASN109
D	GLU47
D	ASP82
D	HOH2148

site_id	EC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 1154

Chain	Residue
C	GOL1155
D	ASP45
D	HOH2061
D	HOH2149
D	HOH2150
D	HOH2151

site_id	EC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL D 1155

Chain	Residue
D	GLN123
D	LEU124
D	LYS125
D	HOH2152
D	HOH2153
D	HOH2154
D	HOH2155
E	ARG61
E	HOH2071

site_id	EC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL D 1156

Chain	Residue
D	ARG117
D	HOH2121
E	ALA113
E	ARG117
E	GLN123
F	ALA20
F	ILE21

site_id	EC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL D 1157

Chain	Residue
D	ARG118
D	LYS122

site_id	EC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN E 1148

Chain	Residue
F	HOH2101
F	HOH2102
F	HOH2103
F	HOH2104
F	HOH2105
F	HOH2106

site_id	EC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN E 1149

Chain	Residue
E	GLU47
E	GLU50
E	GLU79
E	ASP82
E	HOH2116
E	HOH2117

site_id	EC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 E 1150

Chain	Residue
D	GLU127
D	GLY128
D	HOH2125
E	SER69
E	GLY71

site_id	EC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 E 1151

Chain	Residue
D	ARG19
E	ARG38
E	HOH2118
E	HOH2119
E	HOH2120

site_id	FC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL E 1152

Chain	Residue
E	HIS15
E	ARG19
E	HOH2115
E	HOH2121
E	HOH2122
E	HOH2123

site_id	FC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL E 1153

Chain	Residue
A	HIS57
E	ARG118
E	LYS122

site_id	FC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL E 1154

Chain	Residue
E	ARG38
E	GLN41
E	THR42
E	ASP45
E	HOH2124
E	HOH2125

site_id	FC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN F 1147

Chain	Residue
F	HOH2107
F	HOH2108
F	HOH2109

site_id	FC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MN F 1148

Chain	Residue
F	GLU47
F	GLU50
F	GLU79
F	ASP82
F	HOH2089
F	HOH2090

site_id	FC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 F 1149

Chain	Residue
F	LYS112
F	LYS122
F	LYS125
F	HOH2070
F	HOH2091

site_id	FC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL F 1150

Chain	Residue
F	SER69
F	GLY71

site_id	FC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE GOL F 1151

Chain	Residue
A	PRO116
A	ARG117
D	ALA64
E	ALA20
E	ILE21
F	ALA113
F	GLY115
F	ARG117
F	GLN123
F	HOH2092

site_id	FC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL F 1152

Chain	Residue
E	SER48
E	ARG52
F	ASP45
F	SER48
F	ALA49
F	ARG52

site_id	GC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL F 1153

Chain	Residue
E	VAL105
E	ASN109
F	PRO-2
F	GLU47
F	ASP82

220472

PDB entries from 2024-05-29

PDB statistics

PDBj update info

Contact PDBj

numon