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2YCM

Inhibitors of herbicidal target IspD

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD A 1301
ChainResidue
ALYS123
AGLU138
AGLU141
AASP169
AHOH2017

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A 1302
ChainResidue
AGLU121
AGLU191
AHIS271
AHOH2081

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CD A 1303
ChainResidue
AGLU167
AGLU167

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA A 1304
ChainResidue
AGLU139
AHOH2015

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CU A 1305
ChainResidue
AASP290

site_idAC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 30A A 1306
ChainResidue
AARG157
AGLN158
AILE177
AALA203
AGLN238
AVAL259
AASP261
AASP262
AVAL263
ASER264
AILE265
AVAL266
AVAL273
AHOH2093

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AARG91
ALYS98

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000250
ChainResidueDetails
AARG228
ALYS284

223166

PDB entries from 2024-07-31

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