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2YC3

Inhibitors of the herbicidal target IspD

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE MW5 A 1301
ChainResidue
AARG157
ASER264
AILE265
AVAL266
AHOH2177
AILE177
AALA203
AGLN238
AVAL239
AVAL259
AASP261
AASP262
AVAL263

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA A 1302
ChainResidue
AGLU139

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CU A 1303
ChainResidue
ATHR286
AASP290

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A 1304
ChainResidue
ALYS123
AGLU138
AGLU141
AASP169
AHOH2030

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA A 1305
ChainResidue
AGLU139

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CD A 1306
ChainResidue
ALYS214
AASP261
AGLU267

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A 1307
ChainResidue
AGLU121
AGLU191
AHIS271
AHOH2076

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD A 1308
ChainResidue
AGLU167
AGLU167
AHOH2070
AHOH2070
AHOH2071
AHOH2071

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AARG91
ALYS98

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000250
ChainResidueDetails
AARG228
ALYS284

222624

PDB entries from 2024-07-17

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